Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1479 ATGGGTCGGTGCCGAGTTGCGTCGGGCTCCGCCGACGATGACCCCAACCACAGATCAAAGAGAAAAAGGGCTGCTCTGAGTGTAGAAAATTCAGAAACTTTACCTACAGGCCAAGGAGTAACTAATAGCAAGGTATCTCTTTATCACTGCAATTATTGTAACAAAGATATTTCATGGAAGATTCGCATCAAATGTGCTGTTTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTAACACCTCACAAAAGCAATCATCCATATCGGATTATGGGCATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATGTGTTGGAACAAAAAGAAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCGCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAAAGAGGAACTCTTTGCCATGGCGAAGGGACATGAAGCTAAGAAAGAATTTTCTCTAACTGCAGAGGTTACTCTGAAAGAAGAACCTCCCTTCACTGATGGAATAAACTATGAAGAATTGAAGAAGGAAGAAATCAATAATGAAACTGTGTCTAGGTTAAGCTCAGCATGTGGCAAAGCATATTCAAGTACAATTAAGAAGGCTTCCAATGTGATCCAAAACAATGATGGAGTTAAGGTGGAAGAGTCTCAAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAGGAATTTGATGTTGAATACGACAATGATGCAGAGCAAGTGTTGGCTGATATGGACTTTAAGGACACTGATACTGAAGCTGAATATGAAATGAAACTGCATGTGCTCCGTATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGAAAGAGATTTACTCTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGTGTTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATCGAGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTTCTGATGCTTATCGATTTATTGAACAAAAGAGGACAAAGGAATCCGAACCAAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAGGTGCTAAGACATTACAGAAGCCAAATTATCTCGAAGGGGAAGTTGATAGTAGTCCAAGGGGTCTTCAAAAGGGGACTACAGCTGTGGCCAAGGATTCACCTACTGCCATACAAGCCATCACAAGAATACTACCCTCACACTATCTCAACATGCTTCAGACCATGTCATTAGAAATTTCAAAGGGCAGTGTGACCAAGAAATCTGATGCACATTCACTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTGTGAAAAAAGGTGTTGTGCAAACACAATGA 1527 0.4021 MGRCRVASGSADDDPNHRSKRKRAALSVENSETLPTGQGVTNSKVSLYHCNYCNKDISWKIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRIMGIEMYGFGNWNEVAECVGTKRKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSKEELFAMAKGHEAKKEFSLTAEVTLKEEPPFTDGINYEELKKEEINNETVSRLSSACGKAYSSTIKKASNVIQNNDGVKVEESQADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMDFKDTDTEAEYEMKLHVLRIYSKRLDERKRRKNFILERDLLYPDPFEKSLLPEELQICQCYKVFMRFHSKEEHRDLLKNIIEEHRLVKRIQDLQEARIAGCVTASDAYRFIEQKRTKESEPSACKESGQIGTGAKTLQKPNYLEGEVDSSPRGLQKGTTAVAKDSPTAIQAITRILPSHYLNMLQTMSLEISKGSVTKKSDAHSLFKVEPSKVDRVYDMLVKKGVVQTQ 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1479 508 Pfam Zinc finger, ZZ type 48 88 IPR000433 GO:0008270
Aed5g1479 508 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 2 506 - -
Aed5g1479 508 MobiDBLite consensus disorder prediction 10 27 - -
Aed5g1479 508 Gene3D - 447 507 IPR036388 -
Aed5g1479 508 Gene3D - 98 133 - -
Aed5g1479 508 MobiDBLite consensus disorder prediction 1 37 - -
Aed5g1479 508 Pfam Myb-like DNA-binding domain 97 126 IPR001005 -
Aed5g1479 508 Gene3D - 41 97 IPR043145 -
Aed5g1479 508 SUPERFAMILY Homeodomain-like 97 132 IPR009057 -
Aed5g1479 508 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 2 506 IPR034318 GO:0003713|GO:0006357|GO:0035065
Aed5g1479 508 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Aed5g1479 508 CDD SANT 95 126 IPR001005 -
Aed5g1479 508 PIRSF Txn_adaptor_ADA2 96 444 IPR016827 GO:0003713|GO:0006357|GO:0035065
Aed5g1479 508 PIRSF Txn_adaptor_ADA2 434 508 IPR016827 GO:0003713|GO:0006357|GO:0035065
Aed5g1479 508 PIRSF Txn_adaptor_ADA2 35 97 IPR016827 GO:0003713|GO:0006357|GO:0035065
Aed5g1479 508 SMART zz_5 44 89 IPR000433 GO:0008270
Aed5g1479 508 CDD ZZ_ADA2 48 96 IPR041983 -
Aed5g1479 508 SUPERFAMILY Homeodomain-like 452 506 IPR009057 -
Aed5g1479 508 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Aed5g1479 508 ProSiteProfiles SANT domain profile. 97 133 IPR017884 -
Aed5g1479 508 SUPERFAMILY RING/U-box 48 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1479 Aed-Chr5 18828111 18844285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1479 1 504 EF-hand Containing Proteins AT3G07740 48.944 1.63e-167 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed5g1479 ZZ 2.7e-09 CL0006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1479 K11314 - gmx:100779424 870.152