Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1460 ATGCTCCCTCTACGTCCACAATCACAGGGTGGAGGACTACAAACATCGCTGTCTCTTGTTTCTTCAGACGCTCTCCGGTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCGGCTGAAAGTGCAAGTTCTCAAGAAACTTGGCCTACAGCTCATGCAGCTGCATCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGATTAATTGCCTAGAGCAGAAAGTGATTCACCATGTTTCTAGTGCAGACAAAGTTACTCTTCAGGACATTGCAAGAGAAAGTGTTGGTATGATATGTGAAAAAATGCATCGTCTGCCTGAAGAATATCTAGAAGAGTTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGTTCACAGCATAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAGCACATCGAGTGCAGCTCGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAATCTATCACAGACTTCCTTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCAGCTGAGGATTGTACCTGTGAAATATGCACCAACACTAACGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAACAAGTTTGACTTTGAGGTGAATACATGTCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCGGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCGCCGTCATGGGATGGAGAGGCCTTAATGAAGGAACTTGATTATGTTGGTAGGATCTTTCATGGGAGTAAAGACCCCAGAGGAAGGAAGCTATTTTGGAAGTGTGATGGTCTCAAGGAAAAATTGAAAAGTAAAAAAATGGATTCAAAGGCTGCTTGCCGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAAGGCGTGGAAAATGTGGAAAGTGGAAGGTTGGTTGCTCCACAGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAAGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTGGGTCTTGAAGCTTGTGATCGTGAACTAGCTGACAAGGCCAGGGAGGTGACAGAGCTGAAGATGGAGAGGCAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAGATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAAGCTAAACGAGAAGCCGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACCAGCAACTACTTGAAACAACGATTAAACGAGGCCGAGGCCGAGAAGCAGTATCTTTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCACAGAGCAGCAGTAGTGGTGGTGGCGGTGACCCCTCTCAGTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTATAGTGTTCCTCCCAAAGCAGACAACAATCTGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGA 1710 0.445 MLPLRPQSQGGGLQTSLSLVSSDALRSPDEPRSNSDNLRESPAESASSQETWPTAHAAASAKKMENGKAEINCLEQKVIHHVSSADKVTLQDIARESVGMICEKMHRLPEEYLEELKNGLRVILEGGNGSQHREDFFILQKLVQSRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSINLSQTSLIEIFGYKRCRNIACQNQLPAEDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSSKSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMKELDYVGRIFHGSKDPRGRKLFWKCDGLKEKLKSKKMDSKAACRAILMFFQELEVDSAKGVENVESGRLVAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLGLEACDRELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSSGGGGDPSQSQMLMYSKIHDLLYSVPPKADNNLGNERHPFRTNP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1460 569 Coils Coil 57 77 - -
Aed5g1460 569 CDD PHD_OBE1_like 226 280 - -
Aed5g1460 569 MobiDBLite consensus disorder prediction 38 55 - -
Aed5g1460 569 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 554 IPR004082 -
Aed5g1460 569 PIRSF UCP025218 1 554 IPR004082 -
Aed5g1460 569 MobiDBLite consensus disorder prediction 8 23 - -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 187 208 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 301 320 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 233 253 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 444 464 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 104 126 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 146 161 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 161 176 IPR004082 -
Aed5g1460 569 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 483 505 IPR004082 -
Aed5g1460 569 MobiDBLite consensus disorder prediction 550 569 - -
Aed5g1460 569 MobiDBLite consensus disorder prediction 1 63 - -
Aed5g1460 569 Pfam PHD - plant homeodomain finger protein 196 313 IPR032881 -
Aed5g1460 569 Coils Coil 415 484 - -
Aed5g1460 569 MobiDBLite consensus disorder prediction 515 536 - -
Aed5g1460 569 PANTHER PROTEIN OBERON 2 1 554 - -
Aed5g1460 569 SMART PHD_3 226 281 IPR001965 -
Aed5g1460 569 Pfam Coiled-coil region of Oberon 409 547 IPR032535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1460 Aed-Chr5 18313566 18317146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1460 196 293 PHD Gene Family AT5G57380 32.323 5.44e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1460 - - gmx:100781890 1003.82