Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1454 ATGATGATCAACCTGACGCAGGCAATGCTAGCAGAACCTTCCTCAATTTTCGGTTATTTTGACCAAATATCAGATGCTACTGGTAGTCAATTGAACTTGCCTAGAGAGATTGTTGATATGATATGGGATTGCACTTATGATCATTTAAAATTGGTTAATGCTGATTTGCACGAGTTTGATTGCTCACTTCTGAAGAGAATATCTCCCAGCAAATATATTAAGATTGGAAAAGGTTGGAAGACTTTCTACAAGGATAATGCTTTCGAGGTAAATGGTTTTGTTTTACAAGAGTTTGCCATGGAATTCACACCCGAACTGCAGAGCACATGGATATTGATTGATCGAAACCTAAATCAACATCAAGTATCGTACAATTGTAATGTTGAGCAACCTTTGATCACCAATGGTTGGAGTAAGTTGAGGTCCTTCTATGGACTTACTGCAAATCACTCTATCATACTCAAGTATGTGGGTGATTCTATTTTTGAGATTTCAATTTTTAAGAAACCTTTAACTACTGCCAATCTTGAAGCATATGGGAACATGCCAAGAGATATTGTAGATATCATATGGGATTCCAGCTATGATCATTTGATCTTGGTTAATGGAGATTTGCATGAGTTTAAATGCTTACTTTTGAAAAGAAATTGTGGCAGCAAATATGTTAAGATTGGGAAAGGATGGAAGAGTTTCTGTGAGGATAATGGTTTGTCTGCTGGTCAACATCTAACCTTTCGTTGGAGAAGTGAAGAGGAGAATGTAGTGGATGTCAGCGAGTAA 780 0.3705 MMINLTQAMLAEPSSIFGYFDQISDATGSQLNLPREIVDMIWDCTYDHLKLVNADLHEFDCSLLKRISPSKYIKIGKGWKTFYKDNAFEVNGFVLQEFAMEFTPELQSTWILIDRNLNQHQVSYNCNVEQPLITNGWSKLRSFYGLTANHSIILKYVGDSIFEISIFKKPLTTANLEAYGNMPRDIVDIIWDSSYDHLILVNGDLHEFKCLLLKRNCGSKYVKIGKGWKSFCEDNGLSAGQHLTFRWRSEEENVVDVSE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1454 259 SUPERFAMILY DNA-binding pseudobarrel domain 164 255 IPR015300 -
Aed5g1454 259 Gene3D - 93 168 IPR015300 -
Aed5g1454 259 Gene3D - 169 259 IPR015300 -
Aed5g1454 259 SUPERFAMILY DNA-binding pseudobarrel domain 24 94 IPR015300 -
Aed5g1454 259 CDD B3_DNA 202 247 IPR003340 GO:0003677
Aed5g1454 259 Pfam B3 DNA binding domain 207 257 IPR003340 GO:0003677
Aed5g1454 259 SMART B3_2 167 258 IPR003340 GO:0003677
Aed5g1454 259 ProSiteProfiles B3 DNA-binding domain profile. 213 259 IPR003340 GO:0003677
Aed5g1454 259 SUPERFAMILY DNA-binding pseudobarrel domain 96 169 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1454 Aed-Chr5 18092606 18096271 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed5g1454 B3 6.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1454 - K20826 pvu:PHAVU_010G047200g 93.9745