Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1446 ATGAAGCAGAACGAGAAGCAGGAGTTGGAGCCTCCTTCGGAAGATGTTAACAACGATGGTGTTGAGTCCTTGATCCTCAGCCAGGAACTCTTTTGCACTCAAGATTACTTGACACCCCCAAACCCCTTTCCTTTGAAAGGCTTTGATGGCAACATGGACGGGGAAGATGGCCCTTGCCCTAAGTCACCAGAGAAGCCAACTACTTCAAATGGCAAGAGATGCCGAATGGATACTCTCGGTTCTAACTCGTCATGCGATGATGAGCCATTCGTGGAACTTGGGAAGGATGAGGACATCAATGAAATCACTGATAACCCAAGGCCTGGAAGTTTTGTGTCTCTTTCTGCAATTTCATTCCGTTGCAAGCTTATGCCTCCTCCTTGCATTAGAAACCCCTTCTTGGAAAGCCTTTTCAAAGAGGAAATAGACAAATTTGAAACACAGAGATCAAAATTTGCAGCTCACTTCCCTGCACTTACTACTGGTGATGGTCTTCCACACTACTGCACTAACTTTCATCAGATTGAGGAAATTGGTAGAGGTAACTTTAGTAATGTTTTCAAAGTATTGAAACGAGTAGATGGCTGCTTGTATGCTGTGAAACGCAGCATTAGGAAGCTGTGGGACGAAACAGACAGGACAAAAGCCTTGATGGAAGTTCAAGCTTTGGCTGCCTTAGGTTTTTATATTACATCTCTTGTTTTACTCTATAGTAATGGTTTGCTTCTATATAATTTCTTTAGTCTCATTTACCTTCTTGTTTCTTTAGATTTGCATGAGAACATTGTGAGGTACTATTCTTCATGGTTGGATGATGAACAACTGAACATTCAGATGGAGCTATGTGATCACAGCTTATCTATAAAAGATTGCTCATCATTACTTACTGCACAACATGAAATAGAAGCTTTATATCAGATTGCCAGTGCATTGAAATTTATCCATAAGAAGGGAATAGCTCATCTTGATGTTAAGCCTGAAAATATTTATGTGAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTACTTGATAACAGCCTGCTAGTTGACGTGGGTGATGCACATTATATGCCTCAGGAAGTCCTTAATGAGAATTATGATCACCTTGATAAGGTTGATATCTTCTCCTTGGGAGTTTCTATGTTTGAGCTAATTAGTAGGCTGCGGTTGCCAGAATCAGAAATTCAGTTTTCTAATCTTAAAGAGGGAAAGGTGCCACTCGTCCCAGGAGTTTCAGCGCAATTTCAAAACTTGCTTGAGGTCATGATGGACCCTGATCCGGTTAAGAGGCCTTCTGCTGCAGAGTTGGTGGAGAGGGTCCTTGAAATACGAAACAATTGA 1353 0.4124 MKQNEKQELEPPSEDVNNDGVESLILSQELFCTQDYLTPPNPFPLKGFDGNMDGEDGPCPKSPEKPTTSNGKRCRMDTLGSNSSCDDEPFVELGKDEDINEITDNPRPGSFVSLSAISFRCKLMPPPCIRNPFLESLFKEEIDKFETQRSKFAAHFPALTTGDGLPHYCTNFHQIEEIGRGNFSNVFKVLKRVDGCLYAVKRSIRKLWDETDRTKALMEVQALAALGFYITSLVLLYSNGLLLYNFFSLIYLLVSLDLHENIVRYYSSWLDDEQLNIQMELCDHSLSIKDCSSLLTAQHEIEALYQIASALKFIHKKGIAHLDVKPENIYVKNGVYKLGDFGCATLLDNSLLVDVGDAHYMPQEVLNENYDHLDKVDIFSLGVSMFELISRLRLPESEIQFSNLKEGKVPLVPGVSAQFQNLLEVMMDPDPVKRPSAAELVERVLEIRNN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1446 450 ProSiteProfiles Protein kinase domain profile. 172 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1446 450 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 252 360 - -
Aed5g1446 450 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 18 231 - -
Aed5g1446 450 ProSitePatterns Protein kinases ATP-binding region signature. 178 206 IPR017441 GO:0005524
Aed5g1446 450 MobiDBLite consensus disorder prediction 1 22 - -
Aed5g1446 450 Pfam Protein kinase domain 250 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1446 450 SUPERFAMILY Protein kinase-like (PK-like) 163 442 IPR011009 -
Aed5g1446 450 PANTHER BNAA08G27310D PROTEIN 252 360 - -
Aed5g1446 450 PANTHER BNAA08G27310D PROTEIN 18 231 - -
Aed5g1446 450 Gene3D Transferase(Phosphotransferase) domain 1 282 446 - -
Aed5g1446 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Aed5g1446 450 SMART serkin_6 172 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1446 450 MobiDBLite consensus disorder prediction 42 75 - -
Aed5g1446 450 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 373 444 - -
Aed5g1446 450 Gene3D Phosphorylase Kinase; domain 1 158 281 - -
Aed5g1446 450 PANTHER BNAA08G27310D PROTEIN 373 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1446 Aed-Chr5 17692789 17695530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1446 18 442 Core Cell Cycle Gene Families AT1G02970 51.481 2.68e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Aed5g1446 Pkinase 5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1446 K06632 - gmx:100784055 570.852