Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1432 ATGGCCATGGCCATGGCAGAAGCTTCAATAATCGCGCTACACTCCACTCTCTTCCCTCGTTTCAGCCCCAACAAAACCCACGTGGCGGCGGGAGGCCACCGCCACCAAATTAGCGTGTCACCGCGGCGACGCAAGCACCACCATCAAGTCCAGTGCTCGGTGTCTGCAGGCGGCGGGGCGGCGGCGGCGACGACGACGATGGCGAGCCCTGTTTCCTGGGGCTGCGAGATGGACTCGCCGGAGAACGCGGCAGGTCTGCAGAGGTGGCTCTCGGAGTCGGGGCTTCCGCCGCAGAAGATGGGAATAGAGAGAGTGGAGGTGGGAGAGAGAGGACTCGTTGCTTTGAAGAACATTAGGAAAGGGGAGAAGCTCCTCTTTGTGCCTCCCCCACTTGTCATAACTCCAGATTCTGAGTGGAGTTGTCCCAAAGCTGGTGAAATATTGAAAAGGAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATAGCAGCCTTACCTTGTCAACCTTACTCACTTCTTTACTGGACGCAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAAATTAGGGAGAGAGCAGTTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGGTGGAAATGTTGCCTTGGTTCCTTGGGCGGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGACATCGAAGGGAATTGTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTTTGTTATCTTATGGATTTGTTCCAAAGGAAGGCGCTAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTGAAGAAATCTGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATCCGCATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCATTGGAATTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAAAGAAAATTTTGAAGAGGCAAGTGGATCACTGGATTTAGATGTGACTTCTCCTAAACAACTCAACCGAAGGCTCTTTCTGAAACAGCTAGCCATGGACTTGTGTACTAGTGAGCGAAGGATATTATTTCGTGCTCAATACATACTGCGAAGAAAACTGAGGGACATGAGGGCTGGTGAATTAAGGGCCCTAAAAATATTCAACGGTTTCCGGAAATTTTTCCAATGA 1410 0.4652 MAMAMAEASIIALHSTLFPRFSPNKTHVAAGGHRHQISVSPRRRKHHHQVQCSVSAGGGAAAATTTMASPVSWGCEMDSPENAAGLQRWLSESGLPPQKMGIERVEVGERGLVALKNIRKGEKLLFVPPPLVITPDSEWSCPKAGEILKRNSVPDWPLLATYLISEASLMESSRWSNYIAALPCQPYSLLYWTQAELDRYLEASQIRERAVERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMGGNVALVPWADMLNHSCDVETFLDYDKTSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPSDSVELSLSLKKSDESYKEKLELLKKYGLSASQCFPIQITGWPLELMAYAYLAVSPSSMKENFEEASGSLDLDVTSPKQLNRRLFLKQLAMDLCTSERRILFRAQYILRRKLRDMRAGELRALKIFNGFRKFFQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1432 469 CDD SET_RBCMT 93 328 IPR044431 GO:0016279|GO:0018022
Aed5g1432 469 Pfam Rubisco LSMT substrate-binding 347 404 IPR015353 -
Aed5g1432 469 Gene3D set domain protein methyltransferase, domain 1 58 327 - -
Aed5g1432 469 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 31 308 - -
Aed5g1432 469 Gene3D - 333 417 IPR036464 -
Aed5g1432 469 SMART set_7 98 320 IPR001214 GO:0005515
Aed5g1432 469 SUPERFAMILY SET domain 82 331 IPR046341 -
Aed5g1432 469 ProSiteProfiles SET domain profile. 98 314 IPR001214 GO:0005515
Aed5g1432 469 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 344 466 IPR036464 -
Aed5g1432 469 PANTHER - 31 308 - -
Aed5g1432 469 Pfam SET domain 110 314 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1432 85 283 NAC Transcription Factor Family AT3G56570 21.675 2.09e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed5g1432 SET 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1432 - - gmx:100803319 740.725