Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1426 ATGGGTTCCAGAAAATCCGACAATCCTCACTCCGGCGACGGCGCCAAGACGTTCGTGAAGTACTTCGAGAAGTACGGCGAGATAACGGACTCCGTTATCATGAAGGACCGCCACACCGGTCGGCCCAGGGGCTTCGGCTTCATCACCTACGCCGATCCCTCCGTCGTTGACCAAGTCATTCTGGAGAACCACGTCATCAACGGCAAACAGGTCGAGATTAAGAGGACCATTCCCAAGGGCTCGTCGCAGACTAATGACTTCAAAACTAAGAAGATTTTCGTCGGCGGTATTCCAACATCAGTATCCGAAGACGAATTGAAGAACTTCTTCTCGAGGTATGGGAAGGTGGTGGAGCATGAGATTATATGTGACCACACCACAAAGAGATCCCGGGGTTTTGGCTTTATAGTTTTCGACAGTGACAAGGTTGTGGATAATTTGTTGGCAGATGGGACCATGATTGATATGGCTGGAAATCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCACAAACTCAGCTTCTATTCCTCCATTTGCTAGTGACTCTAGGACACGTTCTTACAATGATGGTTTTGGTGGATTTGGCGATTCCTATGGAAATTTTGGTGGTAGTGGGTATGGCGCTGGTTCTTATAGGTCACTTGGAGGTTTTGGTGCTAGGCTTGGTGATTATGGTGGGTATGGGGCTGGAGATGACTTTGGAGGTAGTTTTGGGGGTTATGGTGTTGCTGGTGCTGGTGGCTATGCTGGTTTTCGAGGAGAATCGTCGTTTGGCTACTCTAGTCGCTATGGATCGTACATGGGTGGTGGTCTTGGTGCTGGTTATGGTGGCAGTGGGTTAGGTGCATATGGACGGGGTGGTGGGGGCTATGGAACCTATGGCGGCGCTGGCGCTGGTGCTGACTCTGGCGCTGGTGGGGGTTATGAATCAGGCCCTGGTGCTGGTTATGGAGGAGCAGGAGGTGGAGTGTATCCCAGTAGGGGAAACTATGGGGGCAGTAGTCGTTACCATCCTTATACAAGATAG 1032 0.5068 MGSRKSDNPHSGDGAKTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVILENHVINGKQVEIKRTIPKGSSQTNDFKTKKIFVGGIPTSVSEDELKNFFSRYGKVVEHEIICDHTTKRSRGFGFIVFDSDKVVDNLLADGTMIDMAGNQVEIKKAEPKKSTNSASIPPFASDSRTRSYNDGFGGFGDSYGNFGGSGYGAGSYRSLGGFGARLGDYGGYGAGDDFGGSFGGYGVAGAGGYAGFRGESSFGYSSRYGSYMGGGLGAGYGGSGLGAYGRGGGGYGTYGGAGAGADSGAGGGYESGPGAGYGGAGGGVYPSRGNYGGSSRYHPYTR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1426 343 Gene3D - 79 176 IPR012677 -
Aed5g1426 343 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 16 343 - -
Aed5g1426 343 SMART rrm1_1 8 74 IPR000504 GO:0003723
Aed5g1426 343 SMART rrm1_1 91 164 IPR000504 GO:0003723
Aed5g1426 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 78 IPR000504 GO:0003723
Aed5g1426 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Aed5g1426 343 SUPERFAMILY RNA-binding domain, RBD 77 174 IPR035979 GO:0003676
Aed5g1426 343 Gene3D - 14 78 IPR012677 -
Aed5g1426 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 148 IPR000504 GO:0003723
Aed5g1426 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 62 IPR000504 GO:0003723
Aed5g1426 343 SUPERFAMILY RNA-binding domain, RBD 19 82 IPR035979 GO:0003676
Aed5g1426 343 PANTHER OS08G0320100 PROTEIN 16 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1426 Aed-Chr5 16941904 16946209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1426 21 178 Eukaryotic Initiation Factors Gene Family AT3G16380 24.868 9.34e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1426 K12741 - gmx:100801373 377.481