Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1425 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCCGATGCTGCATGCTTATGTTTGTCTTGTGACCGGAATGTTCATTCTGCTAATGCCCTTTCTAAACGTCATTCGCGGACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAGATCTCACTTTGTCAGAATTGTGACTGGTTGGGTCATGGTACCTCTACATCTTCTTCAGCACATAAGAGACAAGCCATCAATTGCTACTCCGGCTGCCCTTCAGCGGCGGAACTGTCTTCAATATGGTCATTCGTGTTAGACATCTCCGCCATAACCGAATCTACATGCGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGAGTGTTGTGGGGATTCCTCCAGAAGACCGGAATGCGTCTGGTTCTGATGAAGTTACCGATCAACCTGCTTTGGACAAGCCTTTGGTTGGTACATCTTCGATGCCTGACTCAAGCTCCAAATCTCATATTCTGGACCAGCCAGCTGGACCTGCCAATGAATCGCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCCTTATGTGATGATGATGATAATCTGTATGGTGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCACTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGGGAGAAAAAACATGTCTGCTGGAGATTCCAATTGTCAGGATGCTATTGCTGCTGAGGGGTCATCAGTTGGAATGGTCAATGCAATGCAACCAGCTTGCAGCAATGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCAAATCTTTGTTTTACGGGAAGGCCAGCCCAATCAAACCTTTCTTTTTCTGGCATTACCGGAGAGAGTAATGCTGGAGACTATCAAGACTGTGGGGCTTCTTCGATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCATACAATCTGCCAGCCGCAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTGAGGTATGCCTCTCGGAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGCCGGTTTGTCAAAGCTGGTGATGAGGAGGGGCCGGCCTTGATTGATGTTCTTCGAGGAGGAAAAGGGCTGTGTGTCAACAGTGTAAGCTTGCTCGGGATCAGGAGCCGACTCTTTGTCCTTCACTGTGAAGGATGTCCAAAACTTGTGATTGTTATCACAAAGGTGCCCCCCTCTTCAGGCAAATGGTGTTTGGATTGCCTTTCTGTTAAAAGCTTGGCAATTTTCTGCTGCATGATTCTTTTCCAAGAATTCAAAAGCCTTCTTCTTCTATGTTCTTTTGGCCTTAACCATACTTCCATGTCTGATGGGATCATGTCATGTAAAACTCCCCTTCTTCTGCTAGTCACATGTACAAGTGCCTGA 1536 0.4531 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSAHKRQAINCYSGCPSAAELSSIWSFVLDISAITESTCEQELGLMSINENKSVVGIPPEDRNASGSDEVTDQPALDKPLVGTSSMPDSSSKSHILDQPAGPANESLPKLYCPATKCPALCDDDDNLYGDFDMDEVDLNLENYEELFGMALTHSEELFENGGIDSLFGRKNMSAGDSNCQDAIAAEGSSVGMVNAMQPACSNAASADSILSTKTEPNLCFTGRPAQSNLSFSGITGESNAGDYQDCGASSMLLMGEPPWFAPCPENSIQSASRSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDEEGPALIDVLRGGKGLCVNSVSLLGIRSRLFVLHCEGCPKLVIVITKVPPSSGKWCLDCLSVKSLAIFCCMILFQEFKSLLLLCSFGLNHTSMSDGIMSCKTPLLLLVTCTSA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1425 511 CDD Bbox1_BBX-like 4 47 - -
Aed5g1425 511 MobiDBLite consensus disorder prediction 135 181 - -
Aed5g1425 511 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Aed5g1425 511 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 398 - -
Aed5g1425 511 CDD Bbox1_BBX-like 47 90 - -
Aed5g1425 511 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed5g1425 511 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 398 - -
Aed5g1425 511 Pfam CCT motif 354 396 IPR010402 GO:0005515
Aed5g1425 511 MobiDBLite consensus disorder prediction 164 178 - -
Aed5g1425 511 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Aed5g1425 511 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed5g1425 511 SMART bboxneu5 48 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1425 Aed-Chr5 16891918 16897768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1425 1 398 C2C2-CO-like Transcription Factor Family AT3G07650 56.448 2.96e-149 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed5g1425 CCT 4.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1425 - - gmx:100800832 726.472