Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1420 ATGCAAAAAGTTATTGAAGATGTTGATGTTAGGCCTTTTGATATACGTGTGATGACTGTTGAAATATTCTTTGAACATGAAGAACTGTCCAACCAATGTGATAAAACTATTCCTTCAGTTGGCATGTCTTTTGAAACGGCAGATGCAGCTAAGTCATTCTATAGGCAATATGGCATTAAAAAAGAGTTTGGTATAAAGACAAGAAACTCAAAGAAAGGTCGTGATCAACAACTACGATACATCATTTTGGCATGTGCACGAGAGGGTAACTATAAGACACTTCCCACTAAATCAAATGATTGTCTTGCAAAGATCACGGTGGGATTGAAGGATGGGCTATGGTATATTATGTCAGTTACTGAGGAGCATTCCCATGAAAGCATTGTTGCTGGACAGTCAAAAGAAACTAATTTTTGTGTCACTTTCAATTATGATGACCTTAATATTAATTGCACGTGTTTGTTATTTCAATTCAAACACATTATGTGTCGGCACTCATTGGTAACCCTTGCTCAAGAAAGGGTGAAAAATGTTTCACCTAATTACATTTTGGCTAGATGGAGCAAAAATATCAGAAGGAAACACACATACATTAAAACAAGCTATGATGTGAAGAAAATGCAACAAAAAATGCAAGAGGTTTAA 645 0.355 MQKVIEDVDVRPFDIRVMTVEIFFEHEELSNQCDKTIPSVGMSFETADAAKSFYRQYGIKKEFGIKTRNSKKGRDQQLRYIILACAREGNYKTLPTKSNDCLAKITVGLKDGLWYIMSVTEEHSHESIVAGQSKETNFCVTFNYDDLNINCTCLLFQFKHIMCRHSLVTLAQERVKNVSPNYILARWSKNIRRKHTYIKTSYDVKKMQQKMQEV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1420 214 ProSiteProfiles Zinc finger SWIM-type profile. 138 174 IPR007527 GO:0008270
Aed5g1420 214 Pfam SWIM zinc finger 144 168 IPR007527 GO:0008270
Aed5g1420 214 SMART 26again6 149 176 IPR006564 GO:0008270
Aed5g1420 214 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 133 211 IPR031052 GO:0006355
Aed5g1420 214 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 126 IPR031052 GO:0006355
Aed5g1420 214 PANTHER OS03G0843700 PROTEIN 133 211 - -
Aed5g1420 214 PANTHER OS03G0843700 PROTEIN 28 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1420 Aed-Chr5 16844216 16847021 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed5g1420 SWIM 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1420 - K19784 gmx:102667848 115.546