Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed5g1420 | ATGCAAAAAGTTATTGAAGATGTTGATGTTAGGCCTTTTGATATACGTGTGATGACTGTTGAAATATTCTTTGAACATGAAGAACTGTCCAACCAATGTGATAAAACTATTCCTTCAGTTGGCATGTCTTTTGAAACGGCAGATGCAGCTAAGTCATTCTATAGGCAATATGGCATTAAAAAAGAGTTTGGTATAAAGACAAGAAACTCAAAGAAAGGTCGTGATCAACAACTACGATACATCATTTTGGCATGTGCACGAGAGGGTAACTATAAGACACTTCCCACTAAATCAAATGATTGTCTTGCAAAGATCACGGTGGGATTGAAGGATGGGCTATGGTATATTATGTCAGTTACTGAGGAGCATTCCCATGAAAGCATTGTTGCTGGACAGTCAAAAGAAACTAATTTTTGTGTCACTTTCAATTATGATGACCTTAATATTAATTGCACGTGTTTGTTATTTCAATTCAAACACATTATGTGTCGGCACTCATTGGTAACCCTTGCTCAAGAAAGGGTGAAAAATGTTTCACCTAATTACATTTTGGCTAGATGGAGCAAAAATATCAGAAGGAAACACACATACATTAAAACAAGCTATGATGTGAAGAAAATGCAACAAAAAATGCAAGAGGTTTAA | 645 | 0.355 | MQKVIEDVDVRPFDIRVMTVEIFFEHEELSNQCDKTIPSVGMSFETADAAKSFYRQYGIKKEFGIKTRNSKKGRDQQLRYIILACAREGNYKTLPTKSNDCLAKITVGLKDGLWYIMSVTEEHSHESIVAGQSKETNFCVTFNYDDLNINCTCLLFQFKHIMCRHSLVTLAQERVKNVSPNYILARWSKNIRRKHTYIKTSYDVKKMQQKMQEV | 214 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed5g1420 | 214 | ProSiteProfiles | Zinc finger SWIM-type profile. | 138 | 174 | IPR007527 | GO:0008270 | |
Aed5g1420 | 214 | Pfam | SWIM zinc finger | 144 | 168 | IPR007527 | GO:0008270 | |
Aed5g1420 | 214 | SMART | 26again6 | 149 | 176 | IPR006564 | GO:0008270 | |
Aed5g1420 | 214 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 10-RELATED | 133 | 211 | IPR031052 | GO:0006355 | |
Aed5g1420 | 214 | PANTHER | PROTEIN FAR1-RELATED SEQUENCE 10-RELATED | 28 | 126 | IPR031052 | GO:0006355 | |
Aed5g1420 | 214 | PANTHER | OS03G0843700 PROTEIN | 133 | 211 | - | - | |
Aed5g1420 | 214 | PANTHER | OS03G0843700 PROTEIN | 28 | 126 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed5g1420 | Aed-Chr5 | 16844216 | 16847021 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | FAR1 | Aed5g1420 | SWIM | 1.2e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed5g1420 | - | K19784 | gmx:102667848 | 115.546 |