Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1411 ATGTTTTCATATGCAGGGTATGTGCGGGATGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCGGAAAAGGCCATTAACAAGCTCAATGGATCAAATGAAAATGGTACTGCCATCAACTACTCATCTATATTTGACATCTTATTCAGACAACAACAGATGAGCGATGAGGATGGTAGTGCTACTGAGGAAGATGATAACACTAGTGCTATGGAGGAAGAAGGTGCTCCTCCTGAAGATAATTTTGATAAGGGAGCAGACATTGCAAGAAAGGTTCTGAACAACTTGCTTACATCCTCGAGCAAGGGAACATTTGTAAATAATGATTTGACATTGTCCAAGGAAAACAAGGAGCTGAAATCCGATGACATTGTTAAGGACACAGATAGAAAAACATCTGATGAGTCTGAAAAAGTTTCAGGTGTTTCTAAGGGAACAGAAGAAGATGATTTGCAGAAAACACGAAGAAGTGAAGCAATGATTTTCTGGATTTGGGGAAGTAGAATACTTTTTTGCTCCTGTTCTCCACCAAGTTACCAATCTCTTGTTACTCAATGCACACGACTGAGAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTGATACTGCAATTTCAACTGCTAGTACTGCTTCTGGGATGGGTATTTTACTAAACGGTAGGCCATTAAAAGTTTTGAAGGCTTTGGATAAGAAATCAGCACATGAAAAGGAACTAGAGAAAGCAAAAATGAGGTTCATGACCACCACAATCTTTACTTGGAAAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAACTTTCATGTTTCAAGAACTAGACTCATTATCTATAACCTACCCAAGTCAATGAATGAGAAACAACTGAAGAAACTTTGCATCGATGCAATAAAGATTTTGCAAAATGAAAAGAAAGGAAAGGTTGCTCAGGAACGCTATTCCTATTCACAGGGAGTTGCCTTTGTTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACATTTGGTCCTGAACATCGGCCGATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCAGCAGGCGAAACTAGAATCTCAGCAGCAGGCTCCTCAAGGTGACAACAATGTCAGGGAAAATGACAAACCTGGCATGGTAGAAGGTCGCAAGCCTGTAAATGACAGAAAACGAAAATCTCAAGAGCACGACAAACCGGCAAAGGAAGCAGTACTGAATACAAATGGTGAATCAGGTGGTGCAGTGGCAAATGGAAAATCCCCTCAAGGATAG 1401 0.4026 MFSYAGYVRDVFIPQKSDTGLSKGFAFVKFTCKQDAEKAINKLNGSNENGTAINYSSIFDILFRQQQMSDEDGSATEEDDNTSAMEEEGAPPEDNFDKGADIARKVLNNLLTSSSKGTFVNNDLTLSKENKELKSDDIVKDTDRKTSDESEKVSGVSKGTEEDDLQKTRRSEAMIFWIWGSRILFCSCSPPSYQSLVTQCTRLRGTGFLKFKTVEAADTAISTASTASGMGILLNGRPLKVLKALDKKSAHEKELEKAKMRFMTTTIFTWKAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKQLKKLCIDAIKILQNEKKGKVAQERYSYSQGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLQQAKLESQQQAPQGDNNVRENDKPGMVEGRKPVNDRKRKSQEHDKPAKEAVLNTNGESGGAVANGKSPQG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1411 466 PANTHER RNA BINDING PROTEIN 1 408 - -
Aed5g1411 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 53 IPR000504 GO:0003723
Aed5g1411 466 Gene3D - 304 387 IPR012677 -
Aed5g1411 466 SUPERFAMILY RNA-binding domain, RBD 201 371 IPR035979 GO:0003676
Aed5g1411 466 Gene3D - 1 58 IPR012677 -
Aed5g1411 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 53 IPR000504 GO:0003723
Aed5g1411 466 MobiDBLite consensus disorder prediction 67 98 - -
Aed5g1411 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 401 IPR000504 GO:0003723
Aed5g1411 466 CDD RRM4_RBM28_like 305 390 - -
Aed5g1411 466 SUPERFAMILY RNA-binding domain, RBD 1 53 IPR035979 GO:0003676
Aed5g1411 466 Gene3D - 140 254 IPR012677 -
Aed5g1411 466 MobiDBLite consensus disorder prediction 417 446 - -
Aed5g1411 466 MobiDBLite consensus disorder prediction 72 87 - -
Aed5g1411 466 SMART rrm1_1 1 56 IPR000504 GO:0003723
Aed5g1411 466 SMART rrm1_1 306 385 IPR000504 GO:0003723
Aed5g1411 466 Coils Coil 241 261 - -
Aed5g1411 466 MobiDBLite consensus disorder prediction 400 466 - -
Aed5g1411 466 MobiDBLite consensus disorder prediction 137 165 - -
Aed5g1411 466 Coils Coil 384 404 - -
Aed5g1411 466 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1411 Aed-Chr5 16443373 16446583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1411 1 45 Eukaryotic Initiation Factors Gene Family AT3G11400 46.667 5.54e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1411 K14573 - gmx:100791823 572.392