Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1400 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAATTGCTGAGACGCAAGTGTAGCAAAGACTGTATCTTTGCTCCTTATTTCCCTTCTAATGATCCTCAAAAGTCCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGCTTCAGGATCTTCCAGTTGATAAGAGAGGTGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTCGAGACCCTGTGTATGGTTGTGTTGGAGCCATATCCTATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAAAGATACTCTGCATCCAGATGCAACAGGAGCCGTTGA 348 0.4511 MAGNSPCASCKLLRRKCSKDCIFAPYFPSNDPQKSALVHKVFGASNVSKMLQDLPVDKRGDAVSSLVYEAHARVETLCMVVLEPYPICKTRFLSFKCSLQWLKQRYSASRCNRSR 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1400 115 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 75 - -
Aed5g1400 115 Pfam Lateral organ boundaries (LOB) domain 6 75 IPR004883 -
Aed5g1400 115 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 75 - -
Aed5g1400 115 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1400 Aed-Chr5 15740627 15744932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1400 3 74 AS2 family AT2G30130 79.167 5.39e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed5g1400 LOB 1.7e-28 No_clan