Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1376 ATGGCGCAATCTGAGTGGTCTCAACAAATCTTATGCATCATAGCCACTTTACTGCTATGTAGCATTGGTTTCGCAACATGTTTTTACACTGACGACGACCCATTGCCCCAACAGCAGCAAAAGGACCGCGTCGTTGGCAGGCTCCCAGGTCAAGCCTTCAACATCAGCTTTGCACACTATTCTGGCTACATCACCGTCGACGAGAATGAAGGGAGAACACTCTTCTACTGGTTCATTGAGGCGCTTGAAGATCCTCACTCCAAGCCCCTTGGCCTGGATGTTCGTCCATTGCTTTCGGACAGTCAGAAGAAGTTGGGCCTTTTCATATCAATTCAGACAGCAAGACCCTTCATCTCAATCCCTATTCTTGGAACCGAGGTAGGTTCTGTTAATGACTCTCTCTTAATGTTCAATTTGGTTCTCCTAATTTTTAAAAGTTTCAACGTGTTAAGCTGCGTTGCCAACATTCTTTTTCTTGACACTCCTGTTGGGGTAGGATTTTCATATTCAAAAAACGAATCCAACTTGCTGAACAATGGTGATAAGAGGACAGCTGAGGACAACTTAGTATTTCTATGGAAGTGGTTTGAGCGTTTCCCTCAGTATAAAAGTAGTGACTTTTTTATCAGTGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTAAAGTACAACTTGGTTACTAAAGGAAATGCTATAAATCTGAAAGGTTTCATGGTAGGAAATGCTCTAACAGATGATTTCCATGATCAATTGGGGATGTTTGAGTTTATGTGGTCAAGTGGTTTGATTTCGGATCAAACATACAAGCTTTTGAACCTACTATGTGATTTTCAGTCAGTTGAGCACCCGTCAGATTCATGTGAAAAAATTTGGGAAATTGCTAATGAAGAACTTGGAAATATAGACCCATACAGTCTCTATACTCCTCCGTGTCATGCTAATAGAATTGGTAGACTCAGTGCAGAGTATGATCCATGCACTGAAAACCATTCCATTGTATACTTCAATCAACCTGAGGTCCAAACAAGTCTTCATGTTGATCCAGATCACAAGCCTGCTACATGGGAGACCTGCAGAGATCAGAACCCTCTTATTCTCATTCTTTGCAGTGAGGTGGTATTCACAAACTGGAAGGATTCTCCAAGAACAGTGCTCGATATTTATCATCAACTTATTAAGATGGGATTGAGGATATGGGTGTTCAGTGGTAACACAGATGTGGTAATACCTGTAACATCTACTCGCTATAGCATAAATGCTCTCAAACTTCCTACCGTGAGTCCTTGGCGAGCATGGTATGATGCTGGGGAGGTGGGAGGATGGACCCAAGAATATGATGGCCTTACATTTGTAGTTGTAAGGGGAGCGGGGCACGAAGTTCCTTTCCATAGACCAAAACTTGCTCTCACGCTGCTCAAAGCCTTCTTAGCAGGAACATCTATGCCCAAGCTTGAGCTAGTCAGTGCCTCCTGA 1491 0.4292 MAQSEWSQQILCIIATLLLCSIGFATCFYTDDDPLPQQQQKDRVVGRLPGQAFNISFAHYSGYITVDENEGRTLFYWFIEALEDPHSKPLGLDVRPLLSDSQKKLGLFISIQTARPFISIPILGTEVGSVNDSLLMFNLVLLIFKSFNVLSCVANILFLDTPVGVGFSYSKNESNLLNNGDKRTAEDNLVFLWKWFERFPQYKSSDFFISGESYAGHYVPQLSQVIVKYNLVTKGNAINLKGFMVGNALTDDFHDQLGMFEFMWSSGLISDQTYKLLNLLCDFQSVEHPSDSCEKIWEIANEELGNIDPYSLYTPPCHANRIGRLSAEYDPCTENHSIVYFNQPEVQTSLHVDPDHKPATWETCRDQNPLILILCSEVVFTNWKDSPRTVLDIYHQLIKMGLRIWVFSGNTDVVIPVTSTRYSINALKLPTVSPWRAWYDAGEVGGWTQEYDGLTFVVVRGAGHEVPFHRPKLALTLLKAFLAGTSMPKLELVSAS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1376 496 ProSitePatterns Serine carboxypeptidases, histidine active site. 454 471 IPR033124 GO:0004185
Aed5g1376 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 152 490 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 15 92 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 Gene3D - 332 367 - -
Aed5g1376 496 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 152 490 - -
Aed5g1376 496 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 15 92 - -
Aed5g1376 496 SUPERFAMILY alpha/beta-Hydrolases 153 487 IPR029058 -
Aed5g1376 496 Gene3D alpha/beta hydrolase 39 319 IPR029058 -
Aed5g1376 496 Pfam Serine carboxypeptidase 49 90 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 Pfam Serine carboxypeptidase 153 483 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 ProSitePatterns Serine carboxypeptidases, serine active site. 209 216 IPR018202 GO:0004185
Aed5g1376 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 195 220 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 169 IPR001563 GO:0004185|GO:0006508
Aed5g1376 496 SUPERFAMILY alpha/beta-Hydrolases 45 92 IPR029058 -
Aed5g1376 496 Gene3D - 390 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1376 Aed-Chr5 14512856 14518373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1376 401 487 Calmodulin-binding Proteins AT2G22960 25.000 2.24e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1376 K16297 - gmx:100805227 686.411