Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1370 ATGCATGCCTTGATGATAGGTTTGCTTCCATTTTCATTAATGGTTCTGTTTCTCTTTATAACCACTGTTCACTCAGGAGTCTATTATGGGGAGGAAAACGTGACCCTAGTGAATGAAAAAGAGTCACTTGTTTCATTCATGTCATGCATTTTTTCTGACCCCAAAAACGTTCTAAAAAGTTGGAACTCCTCAAGTGTACATGTTTGCAATTGGTATGGTGTCAGATGCAACAATGCAATTGACAACAAGATCATAGAGCTTGCTCTTAATGGAAGCTCACTAGGGGGCACTATTTCCCCTGCTCTAGCCAACCTTTCACACTTGGAAATTCTTGATCTTTCTGACAATTTTCTTGTGGGTCACGTTCCAAGAGAATTGTCCTATTTGTTTCAGCTTCAAGAACTCAGTTTATCTGGGAATTTTCTTCAAGGGGAAATCCCCTCTGAGTTGGGTTCATTTCACAACTTGTACTATCTTAACATGGGAAGTAATCAGCTTGAGGGTGAGATTCCACCCTCACTTTTCTGCAATGGGTCTTCTTCCACGTTGAGGTATATAGACCTCTCTAACAATTCCTTGGGAGGAAAAATACAAATGCCATTGAGCAATGAGTGTTGTATCCTCAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAATAAATTTGTAGGGGGTGTTCCTTTAGCTCTTTCAAACTCCACTAACTTGAAATGGCTTGACTTGGAATCAAATAGGTTGAGTGGGGAGCTACCCTCTGAAATTGTAAGCAGTTTGCCACAACTACAATTCCTCTACCTATCTTATAATGACTTTGTTAGCCATGATGGTAACACCAAACTTGAACCTTTCTTCTCTTCATTGATGAACTTCTCTAGCATGCAAGGCCTCGAATTGGCGGGAAACAATCTCGGAGGGAAGCTACCTCATAACATTGGTGATCTTCTTCCTAGCACCCTCTTACAACTTCACCTAGATGACAATCTCATATATGGTTCTATACCTTCAAACATTGCAAACCTTGTGAATCTCACTCTTCTAAACTTTTCTAGCAACTTGCTAAATGGATCAATACCTCCTAGCCTCTCCCAGATGGGAAGGCTAGAGAGAATCTATTTATCAAATAATTCACTATCTGGGGAGATTCCATCAACCCTTGGTGGCATTAAGCATCTGGGGCTTCTTGACTTGTCAAGAAACAAGCTTTCTGGCTCAATACCAGACACTTTTGCTAACCTTACACAGTTAAGAAGGCTTTTGCTTTATCACAACCATCTTTCTGGAACCATCCCACCAAGCCTGGGAAAATGTGTCAATTTGGAAATTTTGGACCTATCCCACAACAAGATTTCAGGGATGATCCCTAAGGAAGTTGTTGCATCCTTGACTAGCTTGAAACTCTACTTGAATTTATCAAGTAATAGCTTAGATGGACCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTGTCTATTGACCTATCCATTAACAATCTCTCTGGCAAAATCCCACCACAGCTTGGAAGTTGCATAGCATTAGAGTACCTCAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTACCGGATTCATTAGGTAAATTGGCTTATATTCAAGCACTTGATGTATCTTCAAATCAATTGACAGGGGTAATACCACAGTCCCTACAATTGTCCTTGTCCACTCTTAAGAAAGTTAATTTCTCTTTCAACAAATTCTCAGGGAGTGTCTCAAACAATGGAGCCTTTTCATCTTTGACCATAGACTCTTTCCTAGGAGATGATGGTCTCTGTGGCACGATAAAAGGCATGCAAAACTGCCACAAGAAAAAACAAAGGTATCACCATTTGCTTCTCGTACTAATTCTAGTGTTACTATTTGGCAGCCCCATGTTGTGCATGTTGGCAAAACAAAGAATGCAATTTGCAACAGTTAGCAAAGGCGATTTTGAGGATGAAGATGATGAGGAAACAAAGGAGCTCAAGTACCCTAGAATTTCATACACACAACTTATTGAGGCCACTGGAGGCTTCAGTGCTTCAAGCCTAATCGGTTCAGGTCGATTCGGACAGGTCTACAAAGGAGTTCTCCCAGATAACACAAGAATAGCAGTGAAGGTCATAGACACAACAACAGCAGGTGTAATTTCAAGGAGCTTTAGAAGGGAATGCCAAATCTTGAAGAGGATTAGACACAGAAATTTAATAAGAATCATCACAACTTGCAGTAAAAAGGAGTTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGTCTTGAGAGGCACTTATATTCGAGCCAAAAGTTGGATATGGTTCAGTTGGTGAGCATCTGCAGTGATGTAGCTGAGGGAATGGCCTATTTGCACCACTATTCTCCAGTTAGAGTAGTGCATTGTGATCTTAAGCCGAGCAATATACTCCTTGACGAAGATTTGACCGCTTTGGTAACTGATTTTGGAATTGCAAGGCTTGTAAAAGTTGATGACAACATTCCCACAAGTGACTCATCTTTCAGTTCTACACATGGCTTGTTATGTGGCTCTGTTGGCTACATAGCTCCTGCTAGCATGATGCCTAGTCATCACCACTATCACAAAATTGGGCAACATGTTATGTTAGAACTCATAGAGTTGGGGCTTCTCTGCACACACCACAACCCTTCAACAAGACCAAGCATGATGGATGTAGCACAAGAAATGGGGAGGTTCAAGGACTACCTTTCTCATGTATCTTCTTCTCTGCTCATTGGAGATAAATTTAGCCAGAAAATAAATAACTAA 2778 0.4093 MHALMIGLLPFSLMVLFLFITTVHSGVYYGEENVTLVNEKESLVSFMSCIFSDPKNVLKSWNSSSVHVCNWYGVRCNNAIDNKIIELALNGSSLGGTISPALANLSHLEILDLSDNFLVGHVPRELSYLFQLQELSLSGNFLQGEIPSELGSFHNLYYLNMGSNQLEGEIPPSLFCNGSSSTLRYIDLSNNSLGGKIQMPLSNECCILKELRFLLLWSNKFVGGVPLALSNSTNLKWLDLESNRLSGELPSEIVSSLPQLQFLYLSYNDFVSHDGNTKLEPFFSSLMNFSSMQGLELAGNNLGGKLPHNIGDLLPSTLLQLHLDDNLIYGSIPSNIANLVNLTLLNFSSNLLNGSIPPSLSQMGRLERIYLSNNSLSGEIPSTLGGIKHLGLLDLSRNKLSGSIPDTFANLTQLRRLLLYHNHLSGTIPPSLGKCVNLEILDLSHNKISGMIPKEVVASLTSLKLYLNLSSNSLDGPLPLELSKMDMVLSIDLSINNLSGKIPPQLGSCIALEYLNLSGNSLEGPLPDSLGKLAYIQALDVSSNQLTGVIPQSLQLSLSTLKKVNFSFNKFSGSVSNNGAFSSLTIDSFLGDDGLCGTIKGMQNCHKKKQRYHHLLLVLILVLLFGSPMLCMLAKQRMQFATVSKGDFEDEDDEETKELKYPRISYTQLIEATGGFSASSLIGSGRFGQVYKGVLPDNTRIAVKVIDTTTAGVISRSFRRECQILKRIRHRNLIRIITTCSKKEFKALVLPLMPNGSLERHLYSSQKLDMVQLVSICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDEDLTALVTDFGIARLVKVDDNIPTSDSSFSSTHGLLCGSVGYIAPASMMPSHHHYHKIGQHVMLELIELGLLCTHHNPSTRPSMMDVAQEMGRFKDYLSHVSSSLLIGDKFSQKINN 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1370 925 Pfam Protein kinase domain 678 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1370 925 SUPERFAMILY L domain-like 37 271 - -
Aed5g1370 925 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 864 903 - -
Aed5g1370 925 ProSitePatterns Protein kinases ATP-binding region signature. 682 704 IPR017441 GO:0005524
Aed5g1370 925 ProSiteProfiles Protein kinase domain profile. 676 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1370 925 PANTHER OS04G0122200 PROTEIN 29 857 - -
Aed5g1370 925 Pfam Leucine Rich repeat 435 449 IPR001611 GO:0005515
Aed5g1370 925 ProSiteProfiles Leucine-rich repeat profile. 437 458 IPR001611 GO:0005515
Aed5g1370 925 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 29 857 - -
Aed5g1370 925 SMART LRR_typ_2 411 435 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 436 459 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 105 129 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 257 285 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 387 410 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 233 256 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 339 363 IPR003591 -
Aed5g1370 925 SMART LRR_typ_2 153 177 IPR003591 -
Aed5g1370 925 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Aed5g1370 925 SUPERFAMILY Protein kinase-like (PK-like) 657 897 IPR011009 -
Aed5g1370 925 Pfam Leucine rich repeat 365 424 IPR001611 GO:0005515
Aed5g1370 925 Pfam Leucine rich repeat 210 270 IPR001611 GO:0005515
Aed5g1370 925 Gene3D Ribonuclease Inhibitor 38 152 IPR032675 -
Aed5g1370 925 Gene3D Ribonuclease Inhibitor 179 609 IPR032675 -
Aed5g1370 925 SUPERFAMILY L domain-like 341 597 - -
Aed5g1370 925 Gene3D Phosphorylase Kinase; domain 1 638 751 - -
Aed5g1370 925 Gene3D Transferase(Phosphotransferase) domain 1 753 865 - -
Aed5g1370 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Aed5g1370 925 SMART serkin_6 676 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1370 925 Pfam Leucine Rich Repeat 512 533 IPR001611 GO:0005515
Aed5g1370 925 PANTHER OS04G0122200 PROTEIN 864 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1370 Aed-Chr5 14205991 14209975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1370 9 857 Receptor kinase-like Gene Family AT5G20480 34.475 8.24e-139 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aed5g1370 Pkinase 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1370 - - lang:109346572 1207.59