Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1350 ATGCAAACCCCAACATCATCTCACACATACTTGCACTGCTTCCATAATTCCCCACTCACCATGGAAGCTAGTACTGGACTCTTTGCTGGTACTCCAAACAGCAATGAGCTTCCAAAGCCTCTCAAGAACCTAGATGGGCAGCTCTGTGAGATATGTGGTGATTCTGTGGGACTTACGGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGGAGCCCAAGAGTTTTTGGAGATGAGGATGAAGATGATGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATTCTACAAGGGAACGTGACCCGTGAACATAATGATAATAAGGTGAATGGGGAGCTTCCCATATCTTCTCACAGTGATGGAGAACCTGGTGCAAAATTTGATGACAAGGAGAAAATAGATGAGTGGATGTTGCACCAAGGAAATCTATGGTCTGAAACTGATGCCTCAGTTGATCTTGAAAAGGCCATGAAAGAGCCACTGTCAAGGAAAGTAGCAATACCATCAGGCAGACTCAGCCCTTACAGAATGATGGTTGTGGCTAGGCTCCTCCTTCTGCTACTGTTCTTTCAGTACAGAATCTTCCACCCAGTGCCTGAAGCAATTGGACTATGGTTCATATCAGTGACATGTGAAATCTGGCTTGCATTGTCCTGGTTCATTGATCAGATTCCCAAATGGTTCCCCATTGATCGCGAGACGTATCTTGATCGTCTTTCAATCAGGTTTGAACCAGAGAACAAGCCCAATATGCTTTCTCCAATAGATGTGATTGTGACTACTGTGGATCCAATCAAGGAACCCCCTCTAGTTACAGCCAACACTGTTCTTTCAATCTTGGCCATGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAGAAATTCTCTGTAGAACCTAGAGCACCAGAAAAGTACTTCTCTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAATCCACTTATGTCAAAGAACGCCGTACTATGAAGGTGAGGATAAATTCACTTGTGGCTAAATCCATGAGAGTTCCCCAAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACACCAAGGACCACCCAAGTATGATACAAGTCCTTCTTCCTCACAATGTAGGCAACGAACTCCCATGTCTTCTTCGTGTATCGGCAGTTCTAAGCAATGCTCCGTTTGTGCTCAACTTGGACTGCAATCACTATGTAAACAACAGCAAAGTGGTGCGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATCGGCTTCGTACAGTTTCCACTAAGATTCGACAGCCTCGACAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTCACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCGGCATGTATCTTCAGAAGGAAGGCCTTGACTGGCTTTGATTCTCCAAAGGCTTCAAAACGCTCTAGCATGGTGCAAGACAAGGAGCTACTGAAGTCAGAGATGAATGATGAAAATAAATTTGGGAAGTCCACACTTTTCATGAATTCTTCATTAACAGAAGAAGGAGGTGCTGATCCTTCTTCCAGTCAGGAAGCCCTGCTTAAAGAAGCCATCCATGTGGGTTTGAGCTATGGATCCATAGCAGCAGAGACTCTGACAAGTTTGAAGATGCATTGTGGTGGTTGGAGGTCTGTGTACTGCATGCCAAAGAGAGATCCATTCAGGGGCACTGCTCCTATCAACCTCACAGACAGACTCAACCAGGTAGGCACAATTGCAAGCCTCATCTTCATTGCATTGTTCATCTCAATCTTCGCCTCGGCGATTCTCGAACTGAGATGGAGTGGAGTGAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTCATAGGAAGTGTGTCAGCAAACCTCTTCGCAGTCTTGCAAGGAATCATTGGATCCCTTCCAATTATTGGAAGAAGAGCCAACAACACAAACAAATTCAGCATTGTATCAAAGGCACCAGATGATGCAGAGTTTCATGAACTCTATGCAATTAGATGGACAGCACTTCTGATACCTCCAACCACCATCATAATAATCAACCTAATTGGCGTTGTGGCTGGCTTCACAGATGCAGTAAACAGTGGTGAACACTCTTGGGGAGCATTGCTTGGGAAACTCTTCTTTTCTTTGTGGGTTATTGTGCATTTGTACCCTTTCCTTAAGGGTCTTATGGGTAGGCAGAACAGAACACCAACTCTTGTTGTCATTTGGTCTGTGCTCTTGGCTTCTATATTCTCCTTGGTTTGGGTGAGAATTGACCCTTTTGTGTTGAAAACTAAAGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTAA 2463 0.4434 MQTPTSSHTYLHCFHNSPLTMEASTGLFAGTPNSNELPKPLKNLDGQLCEICGDSVGLTVDGDLFVACEECGSPRVFGDEDEDDVDDIEHEFKHEEILQGNVTREHNDNKVNGELPISSHSDGEPGAKFDDKEKIDEWMLHQGNLWSETDASVDLEKAMKEPLSRKVAIPSGRLSPYRMMVVARLLLLLLFFQYRIFHPVPEAIGLWFISVTCEIWLALSWFIDQIPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDVIVTTVDPIKEPPLVTANTVLSILAMDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKVRINSLVAKSMRVPQEGWTMKDETPWPGNNTKDHPSMIQVLLPHNVGNELPCLLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDIHLRCLDGIQGPAYVGSACIFRRKALTGFDSPKASKRSSMVQDKELLKSEMNDENKFGKSTLFMNSSLTEEGGADPSSSQEALLKEAIHVGLSYGSIAAETLTSLKMHCGGWRSVYCMPKRDPFRGTAPINLTDRLNQVGTIASLIFIALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVLQGIIGSLPIIGRRANNTNKFSIVSKAPDDAEFHELYAIRWTALLIPPTTIIIINLIGVVAGFTDAVNSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1350 820 PANTHER CELLULOSE SYNTHASE 73 412 - -
Aed5g1350 820 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 32 74 - -
Aed5g1350 820 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 412 622 - -
Aed5g1350 820 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 622 820 - -
Aed5g1350 820 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 73 412 - -
Aed5g1350 820 PANTHER CELLULOSE SYNTHASE 412 622 - -
Aed5g1350 820 SUPERFAMILY RING/U-box 34 86 - -
Aed5g1350 820 Pfam Zinc-binding RING-finger 39 74 IPR027934 -
Aed5g1350 820 Pfam Cellulose synthase 624 814 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed5g1350 820 Pfam Cellulose synthase 257 406 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed5g1350 820 Pfam Cellulose synthase 525 623 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed5g1350 820 Pfam Cellulose synthase 411 523 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed5g1350 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 74 IPR013083 -
Aed5g1350 820 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 407 517 IPR029044 -
Aed5g1350 820 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 246 352 IPR029044 -
Aed5g1350 820 MobiDBLite consensus disorder prediction 105 126 - -
Aed5g1350 820 PANTHER CELLULOSE SYNTHASE 32 74 - -
Aed5g1350 820 PANTHER CELLULOSE SYNTHASE 622 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1350 Aed-Chr5 13619572 13627039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1350 615 820 Cell Wall Biosynthesis AT5G17420 68.750 3.75e-87 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1350 K10999 - gmx:100777270 1069.3