Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1346 ATGCAGCAAGGTGATCCAACGGTCCTAAGCTTGAGGCCTGGTGGTGGTCGTGGCGGCGGCGGCGGCGGAAGCAGGCTTTTCGCTCACTCCTCCATCTCCTCTTCTCTCTCCGCCGCCGATCTCCCTATCTCGCGCCCTCATGCCTCTTTCTCTCTCAAGACTGGAGATTCACGGTTTGAGGGTTGTGAGCGTGTGCGATATACCAGAGAACAGCTTTTAGAATTTCGAGAGGCTGTTGAGATTGAGGTCCCTGATGATATTCTAAAGATTAAACAAGATATAGAAGTTGAACTTGTTGGTGAAGATCACAGTTGGGGCCGTGCTGAAAGCAATCTTCCTAATCAATTACAAAATCGATATTCTGAGCCAGATAGCCGTGATTGGCGTGGTCGTTCTGGACAACTTCCTGCTAATCCAGATGAGAGGTCTTGGGAAAATGTCAGAGATAACAGGGAGTTTGGTAATAGACAGCAGGATGCTAGTCAGGTTAATCGCCATGACCAACTTAATTCCCAGTTTGCAAGAACTCAAATCTCTTCTATCCAAGGGGGAGGACCTACTCCTATGCTAGTCAAGGCTGAGGTTCCGTGGTCAGTTAGAAGGGGAAGTCTCTCTGAAAAGGATCGTGTCTTTAAGACTGTGAAAGGAATACTGAATAAGTTGACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGACATCTTGAAGGATGTCATTTCGCTTATTTTTGATAAGGCAGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGCTTTGTTCTGGTCTAAATGATAAGCTGCCTCCATTCCCATCTGAAGAACCTGGGGGGAAAGAAATCACCTTTAAGAGAGTGCTCTTGAATATTTGCCAGGAGGCATTTGAAGGTGCTGAAAATCTGAGGGAGGAACTAAAAAGAATGACTGCCCCTGAGCAGGAGATGGATCGTATGGACAAGGAAAGGATGCTCAAGCTCCGTACCCTTGGAAATATTCGTTTAATTGGAGAGCTGTTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCAAGTCTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAAGACTATTGGCAAGCAGCTTGATGAGAGTACTAAATCACGGCGTATAAATGATATTTACTTTAGCCGATTGAAAGAATTAAGCTCAAACCAACAACTTGTACCCCGGCTTAGGTTCATGGTTCGGGGTGTTATAGAGTTGCGTGCTAGTAACTGGGTTCCTAGACGGGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGTTTGCGACCAGGTGCCACTGCAGGTATGAGAAATTCCCGTGGTGGTGTTCAAGGAAATCCCAGCTCTGGGGGCTTTCCTATTGCCCGACCCGGTGCAGGGGGGTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGATTTGATAATAACAACTGGGAGATTCCTAAGACTAGATCTATGCCAAGAGGAGATTTGTCAGGTGTTCAAGCTGCTGGACGCAGCAACTCTGTTTTACTTAACAAGTCCACAACCGTCAATTCAAAACTGCTACCTCAAGGTAGTGGGGGTATTATAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTGCATTTACTGCTCGCCCGTCAAACTTTGATTTAGCTCCTGAGGCTGCACCTCAACTCTCTTCATCCCCTGCCAAAACAGTTGCTCCTGTATCCTCTGAGAAGCAACAACCTCCAGCTGCAAGATTGAATACTGATGAGCTCCTCCGCAGAACTGTCTCTCTCCTGGAAGAATACTTCAGTGTTCGGATTTTGGACGAAGCATTAGAGTGTGTTGAAGAATTAAAATCTCCTTCTTTCCACCCCGAGTTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACCCCTATAGACATAGGGACTGGCTGTTTGTCATTTGGTTCTCTGCTGGATGACATTGGCATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGGAAACTAATTTTGGATGGTGTGTTGGATTTTAAGGTGGTGAGAGAGATTCTCGAGAAGATGGATGATGACATGTTCCAGAGAGCAGTATTTGACAGTGCAGTAGGGGCCATCCGATCTGCATCATCTGGGAAAGCCTTGTTGGATGCTCAGGCATCTGAGATTGAGGCCTGCCAGAGTCTGCTCAAGTGA 2367 0.4567 MQQGDPTVLSLRPGGGRGGGGGGSRLFAHSSISSSLSAADLPISRPHASFSLKTGDSRFEGCERVRYTREQLLEFREAVEIEVPDDILKIKQDIEVELVGEDHSWGRAESNLPNQLQNRYSEPDSRDWRGRSGQLPANPDERSWENVRDNREFGNRQQDASQVNRHDQLNSQFARTQISSIQGGGPTPMLVKAEVPWSVRRGSLSEKDRVFKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSGLNDKLPPFPSEEPGGKEITFKRVLLNICQEAFEGAENLREELKRMTAPEQEMDRMDKERMLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSKSCPVEENVEAICQFFKTIGKQLDESTKSRRINDIYFSRLKELSSNQQLVPRLRFMVRGVIELRASNWVPRREEVKAKTITEIHSEAEKNLGLRPGATAGMRNSRGGVQGNPSSGGFPIARPGAGGLMPGMPGTRKMPGMPGFDNNNWEIPKTRSMPRGDLSGVQAAGRSNSVLLNKSTTVNSKLLPQGSGGIISGRNSALVHGGGAFTARPSNFDLAPEAAPQLSSSPAKTVAPVSSEKQQPPAARLNTDELLRRTVSLLEEYFSVRILDEALECVEELKSPSFHPEFVKEAISLALDKSPPCVEPVANLIEYLYIKKILTPIDIGTGCLSFGSLLDDIGIDLPKAPSNFGEIIGKLILDGVLDFKVVREILEKMDDDMFQRAVFDSAVGAIRSASSGKALLDAQASEIEACQSLLK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1346 788 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 787 IPR045208 GO:0003743
Aed5g1346 788 Gene3D - 616 785 - -
Aed5g1346 788 Gene3D - 202 438 - -
Aed5g1346 788 SMART ma3_7 623 735 IPR003891 -
Aed5g1346 788 SMART if4_15 211 437 IPR003890 GO:0003723|GO:0005515
Aed5g1346 788 SUPERFAMILY ARM repeat 205 440 IPR016024 -
Aed5g1346 788 MobiDBLite consensus disorder prediction 595 615 - -
Aed5g1346 788 SUPERFAMILY ARM repeat 617 775 IPR016024 -
Aed5g1346 788 Pfam MA3 domain 626 735 IPR003891 -
Aed5g1346 788 MobiDBLite consensus disorder prediction 1 26 - -
Aed5g1346 788 MobiDBLite consensus disorder prediction 590 616 - -
Aed5g1346 788 MobiDBLite consensus disorder prediction 106 145 - -
Aed5g1346 788 ProSiteProfiles MI domain profile. 622 744 IPR003891 -
Aed5g1346 788 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 787 - -
Aed5g1346 788 Coils Coil 296 316 - -
Aed5g1346 788 Pfam MIF4G domain 212 437 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1346 Aed-Chr5 13575574 13582238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1346 1 786 Eukaryotic Initiation Factors Gene Family AT5G57870 64.106 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1346 K03260 - gmx:100800438 1306.2