Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1339 ATGAGGGTAGATAGAAAAAGAGATCATAGACCTATCACTTGTACTAAATGTGCAGCTAAGCTTCATGTTTACTTAGATTTCAAGACATCAAAATGGAAAGTTTCTTCATTCCATGAGACTCACAACCATGAACTCACTCCAACCACGGATGTACATCATATTCTTAAGTATCGGATAAAATCTAGGTGGACAATCTTCATACATTTGGTGTTCGAACTTCCCACATTATGTGATATCTATTGGCTCAAAAGGGTGGATATAGTGTTACTGAAGCAACGTGCCAAGATTACAGACGGTGATGTTCATGTTGCATTAAGTTATTTGGAAGGCAAGTCTGGAAATGGTCCAATGCTTTATTCAAAATTCCTAACTACAATTGATGGTAAATTGAAGCATCTATTTTGGGCAGATGGACGCAGTAAAGTGGATTTTGAATGTTTTGGTGATGTTCTTGCCTTTGACACCACTTACAAGAAGACTAAGTACAACAATCCATTGGAAATTTTCTTAGGATGTAATCACCATTCTCATATCACTATTTTTGGTGCTGCTTTGTTGGCTGATGAGACCACTAAGACATATAAGTGGGTATTGCAGACTTTCTTGATAATAATGAACCAAAAGCAACCCAAAAGAGTTGTGCTTAATGGTGATGGCGCTATGAGGGAGGCCATAAAAGAATTGTTCCCAAATGCAATTCATCGTCCGTGTAGTTGGCACTTATGCAAGAATGCTTTGGAGAATGTGAAGAAATTTTTTTTTTTAGATGCCTTTAGTAAAGCAATGTATTTCAAGTTCACCCTAGATGAGTTTGAAGCTTATTGGAAAAAGATTGTTTCTAAACATGGTCTTGAAGGAAACAAATGGGTGCTAAAACATATGAGATTAAATACTTTTGGGCTTCTGCATACTTGCGTGAGAACTTCTTTGCTCATATAA 939 0.3663 MRVDRKRDHRPITCTKCAAKLHVYLDFKTSKWKVSSFHETHNHELTPTTDVHHILKYRIKSRWTIFIHLVFELPTLCDIYWLKRVDIVLLKQRAKITDGDVHVALSYLEGKSGNGPMLYSKFLTTIDGKLKHLFWADGRSKVDFECFGDVLAFDTTYKKTKYNNPLEIFLGCNHHSHITIFGAALLADETTKTYKWVLQTFLIIMNQKQPKRVVLNGDGAMREAIKELFPNAIHRPCSWHLCKNALENVKKFFFLDAFSKAMYFKFTLDEFEAYWKKIVSKHGLEGNKWVLKHMRLNTFGLLHTCVRTSLLI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1339 312 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 90 293 IPR031052 GO:0006355
Aed5g1339 312 Pfam FAR1 DNA-binding domain 5 46 IPR004330 -
Aed5g1339 312 Pfam MULE transposase domain 150 244 IPR018289 -
Aed5g1339 312 PANTHER OS02G0262500 PROTEIN 90 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1339 Aed-Chr5 13374278 13375270 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed5g1339 MULE 9.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1339 - - ccaj:109792835 315.464