Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1334 ATGTTTGACTGTGGTGGTTACAAGTCTCAATATGTGGGTGGGCAACGGGACAAATTTGTGAGGTTGGATGACTTGGATTCTAGACTATCATCACCTTCTGAAGCTGCAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCATGGAAGCAGTACAACTTCTAGGTCTTTTAAAAGAAGAATTAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTAGGCGTATCTAGGGCAGTGTTCCCTGAAGATCTTAAAATTGTGGTTTGGAGATTTCTGCAGAGGTCAAAAGGTTCATATGTACTTGCAACAAAGAGGGCCCTTCTGTTCATCATTTTGCTTCAGTACATTCCTAGATTTTTCCGGATGGTACCATTGACCTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTTGTAGTGACAAAGGGTACAATAAAAATTTCTTGTATTGTGGCAACCAATACATGGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTACATCACAGTGCTCTGCAGATAATGATAATTCTCCTTTTGACTATGGAATTTTCAAACAAGCTTTGTCATCTCGTATTGTTTCATCTAAGAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTAAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTACACTGGGGAGGTTATCTTTTCAATAGCACTAGCCATTGCTGGCCTTATTCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACTATTAGACTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGATCTTAGAGAGCGTGTGAGACGATATGATCAATACAAGTGGTTGGCAACACGAGGTGTAGATGAAGAGAGTTTGGTTCAGAGTTTGCCAAAGGATCTTCAAAGAGACATTAAGCGGCACCTTTGTCTGGCTCTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGACTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAGTACTTACATTGTACGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATTCGGGGTCGTCTGGAGAGTGTTACTACAGATGGTGGGAGGAGTGGATTCTTCAATCGTGGTTTTCTAAAAGAGGCCGACTTCTGTGGGGAGGAGCTTTTGACCTGGGCACTGGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAAAGCTTTAACGGAAGTTGAAACTTTTGCCTTAACTGCTGAAGAGTTAAAGTTTGTTGCCAGTCAGTTTAGGCGCCTGCATAGTAGACAGGTTCAGCACACGTTTCGCTTTTACTCCCAACAGTGGAGGACTTGGGCTGCAATCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAGGAAAACTATGGAGCTTAGTCGGAAGGACGAAGCTGAGGAGTCAGAAGGAACTCGCAGCAATGCCAGTGGCAGCTCATACAGCCTCGGTGCCACCTTATTGGCCTCAAGATTTGCCGCAAATGCTCTTCGTGGTGTACATCGGAATCGGGAAGCCAAGAGTGCCAGGGAGTTGGTGAAACTACAGAAACCTCCCGAGCCTGACTTTACTGCTGATGATGCAGACTAA 1836 0.4346 MFDCGGYKSQYVGGQRDKFVRLDDLDSRLSSPSEAAVKTCGFSIDKLSHGGHGSSTTSRSFKRRIRKGSEGLKSIGRSLGLGVSRAVFPEDLKIVVWRFLQRSKGSYVLATKRALLFIILLQYIPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDKGYNKNFLYCGNQYMEGYSAWQNRSKDILTSQCSADNDNSPFDYGIFKQALSSRIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEESLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVETFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYSKRKTMELSRKDEAEESEGTRSNASGSSYSLGATLLASRFAANALRGVHRNREAKSARELVKLQKPPEPDFTADDAD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1334 611 Gene3D - 87 309 - -
Aed5g1334 611 MobiDBLite consensus disorder prediction 586 611 - -
Aed5g1334 611 Pfam Ion transport protein 117 310 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed5g1334 611 ProSiteProfiles cAMP/cGMP binding motif profile. 384 514 IPR000595 -
Aed5g1334 611 CDD CAP_ED 384 515 IPR000595 -
Aed5g1334 611 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 93 608 - -
Aed5g1334 611 SUPERFAMILY Voltage-gated potassium channels 123 347 - -
Aed5g1334 611 MobiDBLite consensus disorder prediction 542 561 - -
Aed5g1334 611 SUPERFAMILY cAMP-binding domain-like 313 504 IPR018490 -
Aed5g1334 611 ProSiteProfiles IQ motif profile. 520 549 IPR000048 GO:0005515
Aed5g1334 611 Gene3D Helix hairpin bin 312 375 - -
Aed5g1334 611 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 13 94 - -
Aed5g1334 611 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 94 - -
Aed5g1334 611 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 93 608 - -
Aed5g1334 611 Pfam Cyclic nucleotide-binding domain 406 495 IPR000595 -
Aed5g1334 611 SMART cnmp_10 384 515 IPR000595 -
Aed5g1334 611 Gene3D Jelly Rolls 382 502 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1334 Aed-Chr5 13269432 13279102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1334 93 608 Ion Channels AT5G57940 79.961 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1334 K05391 - gmx:100820202 1000.35