Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1325 ATGGAAGAAGAGACGCAGCAGCAACGAGTCACTCACTCGTCCGTCTCCACTGAGTCACGCACTTCTGATGAACCGCCACCCAACTCGGAAACCCTAGCTATCCGCTCTTCGCCTCCTCTGCATGACGACCATGCCACTCATACGCAGGGAAGCTCTACCGCACGGAAGGCTGAAAAAGCTGAGAGTAAGGTGTCAGCCCAGCCTCCTGACGAGGAAACTATTGTAAAAGATGCAGTTGAGGCACCTCAAAAACAGATAGAAAAACAACTTCAGGTGTCTGTTTGTTCAACTTCTGTTTCACAGTCTTTATCATCTGCCCCTAGTCCAACTGTACCAGAACAGAGACCATCTCCTCCTACGGCTAATAGTGTACAAGTGCCAAAAGTAGACAAAGGAACACCTTCTGATGGTACACCTTTATCTTCTGTTTCTGTTGCAAGGGCATCTGTATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTGAAGAGTCCTATGGGTTTTCGAAGCTATTACAGGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATTGTTTATAAAAGTCAACATAGTCATGATCCCCCGCATAAAATTGATATCACTAAGGAAAGTAAACTCCTGCCTTCCAGTGAACCTAAAGTAGAAAGCAGTGTACCAAAGAAGTCCACCAGAGTTCTGAATGATTGTGATCCATCACCTTCTCCAAAAGAACCTTTACAAGAAGCACCTTGCAGTGGTGATAAGAATCTAGAAAACTCATCTAATGGTGAGAATGCAGTAAAACCGAGCAAGAAACCAAAGTTTGTTGTACATGCTGCAGAGGATGTCGGGATATCAGGTGATGGATACCGGTGGCGCAAGTATGGGCAAAAGTTGGTGAAGGGAAATCCACATTTCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCAGTTCGAAAGCACATCGAGACTGCTGTGGATAACCCAAAAGCTCTCATCATAACATACAAGGGAGTGCATGATCATGACATGCCTGTGCCAAAGAAACGACACGGACTGCCAAGTGCTTCGCTTGTGGCTGCCGCAGCACCCACTTCAATGAACAATCTGCAGTTCAAAAAAACTGGCTTGCTACAACAAAACCAGGAAACTGAAGAAGCTCAGTGTTCAGAGGACACAGAAGGAGAATTAACTGGGGAAGCGTTGGACCTTGGGGGTGAGAAAGCAATCGAGTCGGCTCGAACGCTTTTGAGCATAGGTTTTGAAATCAAACCTTGTTGA 1305 0.4552 MEEETQQQRVTHSSVSTESRTSDEPPPNSETLAIRSSPPLHDDHATHTQGSSTARKAEKAESKVSAQPPDEETIVKDAVEAPQKQIEKQLQVSVCSTSVSQSLSSAPSPTVPEQRPSPPTANSVQVPKVDKGTPSDGTPLSSVSVARASVSDGYNWRKYGQKQVKSPMGFRSYYRCTHSNCCAKKIKFCDHSGHVIEIVYKSQHSHDPPHKIDITKESKLLPSSEPKVESSVPKKSTRVLNDCDPSPSPKEPLQEAPCSGDKNLENSSNGENAVKPSKKPKFVVHAAEDVGISGDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNPKALIITYKGVHDHDMPVPKKRHGLPSASLVAAAAPTSMNNLQFKKTGLLQQNQETEEAQCSEDTEGELTGEALDLGGEKAIESARTLLSIGFEIKPC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1325 434 MobiDBLite consensus disorder prediction 97 143 - -
Aed5g1325 434 Coils Coil 375 395 - -
Aed5g1325 434 MobiDBLite consensus disorder prediction 202 280 - -
Aed5g1325 434 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 266 432 - -
Aed5g1325 434 SUPERFAMILY WRKY DNA-binding domain 148 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 MobiDBLite consensus disorder prediction 1 80 - -
Aed5g1325 434 MobiDBLite consensus disorder prediction 202 223 - -
Aed5g1325 434 Gene3D WRKY domain 140 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 Gene3D WRKY domain 278 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 5 270 - -
Aed5g1325 434 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 266 432 IPR044810 GO:0003700
Aed5g1325 434 SUPERFAMILY WRKY DNA-binding domain 288 353 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 5 270 IPR044810 GO:0003700
Aed5g1325 434 SMART WRKY_cls 293 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 SMART WRKY_cls 150 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 MobiDBLite consensus disorder prediction 8 35 - -
Aed5g1325 434 MobiDBLite consensus disorder prediction 260 274 - -
Aed5g1325 434 ProSiteProfiles WRKY domain profile. 288 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 Pfam WRKY DNA -binding domain 152 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 Pfam WRKY DNA -binding domain 295 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g1325 434 MobiDBLite consensus disorder prediction 117 143 - -
Aed5g1325 434 ProSiteProfiles WRKY domain profile. 145 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1325 Aed-Chr5 13111567 13118168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1325 90 434 WRKY Transcription Factor Family AT4G30935 52.186 2.04e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed5g1325 WRKY 5.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1325 - - gmx:100800480 667.922