Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1323 ATGGCCCCTCCCATCCTTCAGCAGTTTCTCTTGGCTATTATTATTGTTGTCTTTCTCAATTCAAGTCTTATTTTTGCAAGGCAATCCAGGATAAATGGTTTGAAAATGAATGTTATTGATCGATGTTGGAGACCAAATCCTGAATGGAAGAAACATCGATCTCAATTAGCCACATGTTCTATCGGCTATGCTGGCAAGATGACAAACAACATAGGCAGTGACCTTATTCGTTATGAAGTTACTGACCCTAATGATGATCCTATAAACCCAAAATTTGGCACCTTGAGGTATGGAGCTTCTATGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAATTAGAAAAAACCCTTCTCATTAGCAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTCAACATTGGTAATAATGCATGTTTAATGATCTTTAAGGCAACCAACATAATTATCCATAGCATTCGTGTTCACCATTGTAAACCTCAAGCCCCTGGGATCGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGCCATGTAGATGGGGATGCAATTAGATTGGTTACCGCTTCAAAGGTTTGGCTTGATCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCCACTTATGTGACTATATCAAATAATTGGTTCAAAAACCAAGACAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGGGACCAAAACATGAAGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTTGCCAATAATCTTTACCAAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTTTTCATAGCACCAACAATAGGGAGTAAGGAGGTGACATGGAGAAAGAGTAGTCATACAAATGGGGATAGATGGGAATTTCATTCGGTGAGAGATGCTTTCGAAAATGGAGCATCATTTGCAGTAACAAAAGGAGGACGTGTGCCAAAGTCGAATTATAGCAAAGAACAAAATTTTGAAGTTATAGATGTCAAATTTGTGAGATCATTGACACGATCATCAGGTGTATTATGA 1140 0.3956 MAPPILQQFLLAIIIVVFLNSSLIFARQSRINGLKMNVIDRCWRPNPEWKKHRSQLATCSIGYAGKMTNNIGSDLIRYEVTDPNDDPINPKFGTLRYGASMIQGKVWITFQRDMHIKLEKTLLISSFTTIDGRGVNVNIGNNACLMIFKATNIIIHSIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKVWLDHNTLYDCQDGLLDVTRGSTYVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTIGSKEVTWRKSSHTNGDRWEFHSVRDAFENGASFAVTKGGRVPKSNYSKEQNFEVIDVKFVRSLTRSSGVL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1323 379 PANTHER PECTATE LYASE 13 379 - -
Aed5g1323 379 PANTHER PECTATE LYASE 18-RELATED 13 379 IPR045032 GO:0030570
Aed5g1323 379 Pfam Pectate lyase 124 304 IPR002022 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 358 379 IPR018082 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Aed5g1323 379 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Aed5g1323 379 SMART amb_all 113 310 IPR002022 -
Aed5g1323 379 SUPERFAMILY Pectin lyase-like 58 343 IPR011050 -
Aed5g1323 379 Gene3D - 36 379 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1323 Aed-Chr5 13093113 13094585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1323 67 314 Polysaccharide Lyase AT5G09280 70.968 5.92e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1323 K01728 - gmx:100780437 675.241