Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1317 ATGTACATACAGGTTGGGAATTTCTTGCACTACATAAGCCGTTTCATCGCAGGCTTTACCATTGGTTTTGTCAGAGTGTGGCAGATCAGTTTGGTGACACTTGCCATTGTACCCTTAATTGCTCTTGCTGGAGGTCTTTATGCATACGTGACAATTGGTCTTATTGGAAAAGTTCGAAAATCTTATGTGAGAGCTGGTGAAATAGCTGAAGAGGTAAGTATCATTGTGTTTTCATACTTCACATTTGAAAAAAATGAGTATTTTGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATACAAAGTGGCTCTGATGAACACATACAAAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTGGGACTAGGCTCTATGCATTGTGTTCTTTTCCTTTCATGGGCTCTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAACATAGCCAACGGTGGCGATGCTTTCACTACCATGCTCAATGTAGTAATTTCTGGCTTGTCACTAGGGCAGGCAGCACCAGACATTTCTGCATTCATCAGAGCAAAGGCAACAGCCTATCCCATATTCGAGATGATAGAGAGGGACACAATGACCAAACCCACCTCACAAAAAAACGGCCAGAAAAAATTAACCAAACTGGAAGGCCAAATCCAGTTCATGGATGTCTGTTTCAGTTATCCATCTCGTCCTGACGTCGCCATCTTCGACAATTTATGCCTCGAGATCCCTCCGGGAAAAATCTTGGCTCTTGTGGGAGGGAGTGGTTCTGGAAAGAGCACGGTTATATCGTTGATTGAGCGGTTCTATGAACCAGCTTCTGGTCAGATACTGTTGGATGGGAGCAATATCAGGGAACTTGATCTTAAATGGCTTAGACAACAGATTGGACTGGTTAACCAAGAGCCTGCACTTTTTGCTACTAGCATAAGGGAGAATATATTGTATGGAAAAGATGATGCCACTCTTGAAGAAGTAAATCAGGCTGTGATGCTTTCTGATGCTCAATCTTTCATTAACAATCTTCCTGATGGGTTAGATACTCAGAAACAAAGGATTGCAATATCCCGCGCCATAGTGAAGAACCCATCAATCCTTCTGCTTGACGAAGCAACCAGTGCACTGGATTCGGAGTCTGAGAAAAGCGTGCAGGAGGCTCTGGATCGCGTCATGGTTGGCAGAACAACCGTGATCGTTGCGCACAGACTCTCCACCATTAGGAATGCGGACATGATCGCTGTTATGGATGGTGGCAAGGTGGTGGAGATTGGAAACCATGAAGAACTCGTTTCGAATCCAAGTTCGTCTTCGTCCCGCGGAGCAAGCTTTCGCGGCAGTTTCCGATCAGACAAAGAATCAACGAGCCGGGCTTTCGGCGATGGAGCTGAGAGTGTTGTTGGAGCTTCAAGGCATCATGTCTCAGCAAGAAAACTGTATTCCATGATTGGTCCCGACTGGCTTTATGGTGTTTTTGGAACATTGGGTGCGTTCATTGCTGGAGCGCAGATGCCACTCTTTGCTCTTGGAATCTCTCACGCTCTTGTGTCTTATTACATGGACTGGGACACAACGCGCCATGAAGTGAAGAAAGTTGCTCTTCTCTTCTGTGGGGCTGCGGTAATCTTAAAAGATTACCGTGCATCTTTTATCCTCTCACATTCCAATGCTTATGGAGTGGAATCCTATTCATCATCTATTTTGAAGAGTGAAATTGGCTGGTTTGATGACACAAACCACACAAGTTCTATGCTTTCATCTCGTTTAGAGACCGATGCAACATTTTTAAGAACTGTAGTTGTTGATCGTTCAACAATTCTTCTGCAGAATGTTGGTCTTGTAGTTGCTTCATTTATCATTGCCTTCATGCTGAACTGGAGGATAACGCTTGTTGTGTTGGCCACATACCCTTTGATCATTAGTGGTCACATTAGCGAGGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCTGCATTTTGTGCTGAACAAAAGGTTCTTGACCTTTATGCTCATGAGCTTGTGGAGCCTTCCAAGCGTTCATTCAACCGTGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGGTCTGTGTTGATGGAAAAGGAGCTTTCTAGCTTCAAATCAATTATGAAGTCATTCATGGTTTTAATTGTGACAGCACTAGCCATGGGGGAGACTCTAGCACTGGCACCTGACCTCTTGAAAGGAAACCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGGAATATTGGGTGATGTTGGAGAAGAGATGGAGACAGTGGAAGGAACAATTGAGCTTAAAAGAATCCATTTCAGCTACCCTTCAAGGCCAGATGTGGTTATTTTTAATGATTTCAATCTTATAGTGCCTGCAGGGAAGAACATTGCCTTGGTGGGGCATAGTGGTTGTGGCAAAAGCTCAGTCATTTCTCTTATACTCAGATTTTATGATCCAACCTCTGGGAAGGTGATGATTGATGGTAAGATGTTTGTACAGCTTATGCTTTAA 2589 0.4376 MYIQVGNFLHYISRFIAGFTIGFVRVWQISLVTLAIVPLIALAGGLYAYVTIGLIGKVRKSYVRAGEIAEEVSIIVFSYFTFEKNEYFVQAFAGEERAVRSYKVALMNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIRAKATAYPIFEMIERDTMTKPTSQKNGQKKLTKLEGQIQFMDVCFSYPSRPDVAIFDNLCLEIPPGKILALVGGSGSGKSTVISLIERFYEPASGQILLDGSNIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEVNQAVMLSDAQSFINNLPDGLDTQKQRIAISRAIVKNPSILLLDEATSALDSESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVMDGGKVVEIGNHEELVSNPSSSSSRGASFRGSFRSDKESTSRAFGDGAESVVGASRHHVSARKLYSMIGPDWLYGVFGTLGAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKVALLFCGAAVILKDYRASFILSHSNAYGVESYSSSILKSEIGWFDDTNHTSSMLSSRLETDATFLRTVVVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYAHELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILGDVGEEMETVEGTIELKRIHFSYPSRPDVVIFNDFNLIVPAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMIDGKMFVQLML 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1317 862 Pfam ABC transporter 810 856 IPR003439 GO:0005524
Aed5g1317 862 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 565 758 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1317 862 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 182 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1317 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 855 IPR027417 -
Aed5g1317 862 MobiDBLite consensus disorder prediction 430 458 - -
Aed5g1317 862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 219 443 IPR003439 GO:0005524
Aed5g1317 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 434 IPR027417 -
Aed5g1317 862 Pfam ABC transporter transmembrane region 492 744 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1317 862 Pfam ABC transporter transmembrane region 6 166 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1317 862 SMART AAA_5 246 428 IPR003593 -
Aed5g1317 862 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 4 436 - -
Aed5g1317 862 CDD ABC_6TM_Pgp_ABCB1_D2_like 480 776 - -
Aed5g1317 862 MobiDBLite consensus disorder prediction 430 445 - -
Aed5g1317 862 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 4 436 IPR039421 -
Aed5g1317 862 CDD ABC_MTABC3_MDL1_MDL2 219 433 - -
Aed5g1317 862 Gene3D ABC transporter type 1, transmembrane domain 4 643 IPR036640 GO:0005524|GO:0016021
Aed5g1317 862 Gene3D - 209 456 IPR027417 -
Aed5g1317 862 Gene3D - 781 857 IPR027417 -
Aed5g1317 862 Pfam ABC transporter 238 374 IPR003439 GO:0005524
Aed5g1317 862 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 440 859 - -
Aed5g1317 862 SUPERFAMILY ABC transporter transmembrane region 477 772 IPR036640 GO:0005524|GO:0016021
Aed5g1317 862 Gene3D ABC transporter type 1, transmembrane domain 645 780 IPR036640 GO:0005524|GO:0016021
Aed5g1317 862 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 440 859 IPR039421 -
Aed5g1317 862 SUPERFAMILY ABC transporter transmembrane region 4 196 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1317 Aed-Chr5 12947875 12957818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1317 430 862 Calmodulin-binding Proteins AT2G36910 30.635 5.31e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1317 K05658 - gmx:100809752 1401.73