Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1314 ATGGGTTTGGGAGTGTTTGGTTCTATTCTAGTTCTGACACTCTTCTTCAAATACCTGGCATCTCAGCAACCAAACACTGATGATTTCTTTGTGTGTGAATTTTTCAAGAAGATGGGTTTGGAATCCTCCAAAGTCCACAACTTTTCAGCTTCTGTTTGTTCATGGAACGGGGTTTCATGTGATGCCAAGAGAGAACATGTTGTTGGGTTAGTCTTTTCTGGCATTGGCCTCTCTGGTCCCATTCCAGACACCACCATAGGAAAACTCACCAAGCTTCAATCTTTGGACCTTAGCCACAACAAAATCACTGATTTGCCTTCTGATTTCTGGAGCTTTGGCCTTCTCAAGAGCCTCAACCTCTCCTCCAACCAGATTTCTGGTTCATTGACTAACAACATTGGAAACTTTGGCTTGCTTCAAGTGTTTGACTTGTCCAACAACAATCTTTCTGGCCAGATACCTGAAGATATTAGTTCCCTGATGAGTCTGAGAGTCCTCAAACTTGACCACAACAGGTTTGAGCAAAGAATACCCTCTGGGATTCTCAAGTGCAAGTCTCTAGTTTCCATTGACCTTTCTTCAAATCAGCTAAGTGGGGCAGTCCCAGATGGTTTTGGTGATGCTTTTCCTAATCTTGTTACCTTGAACCTTTCTAGGAATAGTATTAATGGCAGTGATTCAGATATTTCACGCAATTCCTCTCATGGTTCTTTGATGAGTTTGTTTCATGGAAGGGTTAAGGTCTTGGACCTTAGCAGAAACCAATTTGAAGGTCACATTTCTCAGGTACATTCCATCTCTAACTACAATTGGTCTCATTTAGTTTATCTTGATTTGTCAGAGAATCAGCTGGGTGGGGAGATTTTCCAAAATCTGAATGAATCCAAGAATCTAAAGCACCTTAATCTTGCTCACAATAGATTTATAAGTCAGAAATTCCCCAAGATTGAAATGCTCTCAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTTATTGGTCACATTCCTGCTGAAATCTCACACCTAGGTAATTTGAGAGCACTTGATGTTTCTATGAATCATCTTATAGGGAAAGTCCCTTCACTAACCAATAATAAACATCTCCAAATTCTTGATCTTTCAAACAACAATTTGAGTGGTGATGTCCCTTCATCAGTCATAGAGAAACTTCCCTCAATGGAGAAATACAACTTCTCTTATAACAACTTGACCTTCTGTGCATTGGAAACCAAATCAGCTATCCTCCAAGCAGCATTCTATGGATCATTCAACAGTTGCCCAATTGCTGCAAACCCAAGTATTCTGAAAAAAAGAGCCACTCAAGACAAGGGAATGAAGCTAGCTCTGGCATTGACCCTCTCAATGATCTCATTGATTGCAGGGCTTTTGCTTCTAGCATTTGGTTGCCTCAAGAAAACAAAACCATGGCCTGTTGTGAAGCAAGCCTCATACAAAGAAGAGCAAAACAACATGTCAGGTCCCTTTTCATTCCACACTGACTCAACCACTTGGGTGGCTGATGTCAAGCAAGCAACATCTGTGCCAGTAGTAATCTTTGACAAGCCACTGCTGAACATCACATTTGCAGACCTATTGGCTGCAACTTCAAATTTTGATAGGGGCACCCTTTTGGCTGAAGGGAAATTTGGACCTGTTTATAGAGGCTTTCTACCTGGTGGCATTCATGTAGCAGTTAAAGTTTTGGTTTTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGCTATTGTGTAGCTGGGGACCAGAGGATTGCAATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTCTACGACTTGCCACTCGGTGTACTACAACAAAGAACAGATGATTGGAGCACAGATACATGGGAAGAACATGAACAACATGACAGTAATGGTATTCAAAATGCTGGTTCAGAAGGGGTGCTCACAACATGGAGATTTCGCCACAAAATTGCACTCGGCACCGCCCGAGCACTGGCATTTCTGCACCATGGATGCTCCCCACCAATCATCCACAGAGATGTCAAAGCTAGCAGTGTTTACTTGGACTACAACTTGGAGCCGAGGTTGTCGGATTTTGGTCTGGCCAAGATTTTTGGGAGTGGCTTGGATGATGATGAGGACATTGCACTTTGTTCACCTGGCTATGTTCCACCAGAGTTTTCTCAGACAGAGTTTGACACCTCAACACCTAAATCCGATGTGTACTGTTTCGGAGTAGTTCTCTTTGAGTTACTAACTGGGAAAAAGCCGGTTGGAGATGATTACCCTGATGAGAAGGAAGCAAGTTTGGTTAGTTGGGTGAGAGGACTAGTGAGAAAGAACAAAGCTTCAAGAGCTATTGATCCGAAGATTCGTGACACCGGAGCGGAGGAGCGAATGGAGGAGGCTCTAAAGGTTGGTTATCTTTGCACTGCTGATCTTCCTTCAAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTTCTGCTGCTAATTAG 2562 0.4251 MGLGVFGSILVLTLFFKYLASQQPNTDDFFVCEFFKKMGLESSKVHNFSASVCSWNGVSCDAKREHVVGLVFSGIGLSGPIPDTTIGKLTKLQSLDLSHNKITDLPSDFWSFGLLKSLNLSSNQISGSLTNNIGNFGLLQVFDLSNNNLSGQIPEDISSLMSLRVLKLDHNRFEQRIPSGILKCKSLVSIDLSSNQLSGAVPDGFGDAFPNLVTLNLSRNSINGSDSDISRNSSHGSLMSLFHGRVKVLDLSRNQFEGHISQVHSISNYNWSHLVYLDLSENQLGGEIFQNLNESKNLKHLNLAHNRFISQKFPKIEMLSGLEYLNLSKTSLIGHIPAEISHLGNLRALDVSMNHLIGKVPSLTNNKHLQILDLSNNNLSGDVPSSVIEKLPSMEKYNFSYNNLTFCALETKSAILQAAFYGSFNSCPIAANPSILKKRATQDKGMKLALALTLSMISLIAGLLLLAFGCLKKTKPWPVVKQASYKEEQNNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVFGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQQRTDDWSTDTWEEHEQHDSNGIQNAGSEGVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDDDEDIALCSPGYVPPEFSQTEFDTSTPKSDVYCFGVVLFELLTGKKPVGDDYPDEKEASLVSWVRGLVRKNKASRAIDPKIRDTGAEERMEEALKVGYLCTADLPSKRPSMQQIVGLLKDIEPSAAN 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1314 853 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Aed5g1314 853 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Aed5g1314 853 SMART LRR_typ_2 319 343 IPR003591 -
Aed5g1314 853 SMART LRR_typ_2 112 136 IPR003591 -
Aed5g1314 853 SMART LRR_typ_2 367 390 IPR003591 -
Aed5g1314 853 SMART LRR_typ_2 160 184 IPR003591 -
Aed5g1314 853 SMART LRR_typ_2 89 111 IPR003591 -
Aed5g1314 853 SMART LRR_typ_2 209 232 IPR003591 -
Aed5g1314 853 SMART LRR_typ_2 185 207 IPR003591 -
Aed5g1314 853 Gene3D Phosphorylase Kinase; domain 1 499 614 - -
Aed5g1314 853 Gene3D Transferase(Phosphotransferase) domain 1 649 853 - -
Aed5g1314 853 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 849 - -
Aed5g1314 853 PRINTS Leucine-rich repeat signature 343 356 - -
Aed5g1314 853 PRINTS Leucine-rich repeat signature 92 105 - -
Aed5g1314 853 Gene3D Ribonuclease Inhibitor 233 313 IPR032675 -
Aed5g1314 853 Gene3D Ribonuclease Inhibitor 182 232 IPR032675 -
Aed5g1314 853 SUPERFAMILY L domain-like 42 406 - -
Aed5g1314 853 SUPERFAMILY Protein kinase-like (PK-like) 517 844 IPR011009 -
Aed5g1314 853 SMART LRR_sd22_2 271 294 - -
Aed5g1314 853 SMART LRR_sd22_2 366 393 - -
Aed5g1314 853 SMART LRR_sd22_2 295 321 - -
Aed5g1314 853 SMART LRR_sd22_2 89 107 - -
Aed5g1314 853 Pfam Protein tyrosine and serine/threonine kinase 543 842 IPR001245 GO:0004672|GO:0006468
Aed5g1314 853 Pfam Leucine Rich repeat 365 381 IPR001611 GO:0005515
Aed5g1314 853 Pfam Leucine Rich repeat 272 287 IPR001611 GO:0005515
Aed5g1314 853 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Aed5g1314 853 Gene3D Ribonuclease Inhibitor 314 427 IPR032675 -
Aed5g1314 853 ProSiteProfiles Protein kinase domain profile. 539 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1314 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 849 - -
Aed5g1314 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1314 Aed-Chr5 12874982 12877543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1314 70 847 Receptor kinase-like Gene Family AT5G07280 31.377 7.48e-112 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Aed5g1314 PK_Tyr_Ser-Thr 9.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1314 - - gmx:100807051 1500.34