Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1312 ACTGAACTATGCCGATTCAGTGGTGCCAAGATCTATCCGGGAAGAGGCATCAAATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGTCAACTCAAAATGTAAGAGGTATTTCCACAACCGAAGCCATCGAAGCTCACCTGGACTGCAATGTACCGAAAGCAACACAAAAAAAAGGAGACGTGCAGCCAAGAAGCCTTACTCTAGGTCCATTGTTGGTGCCACTTTGGAAGTTATCCAGAAGAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCCGCTCTTCGTGAAATTAAGAAGAGGGTGAAGAAAACGAAGGATGAGAAGAAGGTTAAGAAAGCAGAAATTGCATCCAAGTCTCAAAAAGCAGGAGGGAAAGGCAAAGGCAATGTTTCTAAGGGTGCTGTGTCCAAAGGTCCCAAACTCGGTGGAGGCGGGAAACGCTAA 456 0.4627 TELCRFSGAKIYPGRGIKFVRGDSQVFLFVNSKCKRYFHNRSHRSSPGLQCTESNTKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKKRVKKTKDEKKVKKAEIASKSQKAGGKGKGNVSKGAVSKGPKLGGGGKR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1312 151 Coils Coil 98 118 - -
Aed5g1312 151 SMART 4TRASH 4 42 IPR011017 -
Aed5g1312 151 PANTHER 60S RIBOSOMAL PROTEIN L24 1 150 IPR000988 -
Aed5g1312 151 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 41 - -
Aed5g1312 151 Pfam Ribosomal protein L24e 1 42 IPR000988 -
Aed5g1312 151 Gene3D - 58 126 - -
Aed5g1312 151 MobiDBLite consensus disorder prediction 104 151 - -
Aed5g1312 151 MobiDBLite consensus disorder prediction 40 67 - -
Aed5g1312 151 CDD Ribosomal_L24e_L24 1 41 IPR000988 -
Aed5g1312 151 ProSitePatterns Ribosomal protein L24e signature. 6 23 IPR023442 -
Aed5g1312 151 Gene3D Ribosomal protein L24e 1 57 IPR038630 -
Aed5g1312 151 MobiDBLite consensus disorder prediction 104 122 - -
Aed5g1312 151 PANTHER 60S RIBOSOMAL PROTEIN L24 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1312 Aed-Chr5 12805627 12806529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1312 1 145 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 67.097 8.98e-59 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1312 K02896 - gmx:100499720 213.386