Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1307 ATGGGGAAAAATGAATTTCTCACACCTAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAGTGCCGAGATGAGAATGGGTTTAAATGCCATTGCATGAGTGAAGGCCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACATCGGATAGTTGAGGGCTATTCTGAAGAGTTTGAGAGCACTTTCCTGGAGCACATGAAACGCAGCCACCGGTTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGATAGACACCATGTTCATATGAACTCCACTCAGTGGGCTACACTTACAGAGTTTATTAAGCACTTGGGTCGAATTGGCAAATGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTTAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGTAGACGAAGAAAAGCAAGAGAAGGAAATCATGAAACAGATTGAAAAGGCTGAGCAAATGATGCAGCCGCCTACTTCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCTGAGGGAACTAAATATGGAAGATGGAATTAAGATAGGATTTTCTCTTGGGTCATCATCAGCTAAACCTTTGGTCAAGGAAAAACATGAGGCATCAAGGGTTGTGTTTGATGAGGGTGATGAAGAGAAATATAATGATAGGAATCCCGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGAGAAGAAGAGAAGAAAAAGGAAAAAATTAACCGGAAAGATTATTGGTTGCATGAGGGAATTGTTGTCAAGATTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAGAAGGGTGTTGTGAGGAAGGTGATTGACAAGTATGCTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGCCGTGTTAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAGGCTGTTGGGGGTGGATACAAATAATTTTTCTGCTAAGGTGCAAATTGAGAAAGGACCCTATGATGGCAGAGTACTTAAAGCTATGGAATATGAGGACATTTGTAAACTAGCCTAG 1197 0.4202 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFIKHLGRIGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMVDEEKQEKEIMKQIEKAEQMMQPPTSEADQPSQVEPLRELNMEDGIKIGFSLGSSSAKPLVKEKHEASRVVFDEGDEEKYNDRNPGNNLKRKESGGGKSALDEMMREEEKKKEKINRKDYWLHEGIVVKIMSKVLAEKGYYKQKGVVRKVIDKYAGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIARLLGVDTNNFSAKVQIEKGPYDGRVLKAMEYEDICKLA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1307 398 Gene3D - 60 160 IPR038254 -
Aed5g1307 398 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Aed5g1307 398 Pfam KN17 SH3-like C-terminal domain 280 333 IPR041330 -
Aed5g1307 398 MobiDBLite consensus disorder prediction 235 269 - -
Aed5g1307 398 Coils Coil 163 183 - -
Aed5g1307 398 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 398 IPR037321 -
Aed5g1307 398 CDD KOW_KIN17 344 397 IPR041995 -
Aed5g1307 398 Gene3D - 342 398 IPR014722 -
Aed5g1307 398 Coils Coil 261 281 - -
Aed5g1307 398 Gene3D - 288 341 - -
Aed5g1307 398 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Aed5g1307 398 PANTHER BNAA05G13760D PROTEIN 1 398 - -
Aed5g1307 398 SMART Kin17_mid_2 52 178 IPR019447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1307 Aed-Chr5 12761113 12763321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1307 1 398 C2H2 Transcription Factor Family AT1G55460 70.433 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1307 K13102 - gmx:100785931 748.043