Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1298 ATGGCTGTTGCATGGAAGAAGTTAGCAACTTTAGGGAAGGGGTCTTTTGCCACCGTTTATCTTGCTACTCTTTCTCTTCCACAAGAACCGAATGACAAAGAAAAGGTTGTAGCCGTGAAGAGTTCAAGTCATTTCTCTTTCTCAATTGTTTCAATGCAGAAAGAAAAAAGAATTCTGGACTTGTTCATTGGTTGCAAAGAAATCCTTCAATGCTATTTTGACGAATTAACTGTTGATGAGAGAAAAGATTTCACTTACAATCTTTTCATGGAGGTTGCACCTTACGGTTCTCTTGATTATTTAATAAAGAAGAAGGGGCCACTGACAGAGAGTGAAGTGAGAGCCTACACTATCATGCTTCTCAAAGGGCTTTCTTGCATTCACCAAAAGGGAGTTGTTCATTGTGATCTTAAACCGGACAACATTCTTCTGTTTCCTAATTCATCTGAGGAGAAGGATGATCATGAAATGTTGTTTCAACTGAAGATTGCTGATTTTGGAATGTCCAAAACTAAAGAAGATCTTTCAAATGATGCTGACTCTAAGAAGACCAAGTTTAGAGGGACGCCTTATTACATGTCACCGGAATCGGTTGTTGGTGTGATCGAACCGGCATTGGATATATGGTCTCTTGGATGCATTGTGATTGAGATGATAACCGGATTGCGTGCATGGAACCTGCTAACGAAAACGAAAGAGGAGATAATGTACAAGCTTTTAGTTCTTGAAGCAGCACCAAAAATACCCAATGGACTGAACTGGGTTTGCAAGAATTTCTTGAACAAGTGTTTTGTGAAGGATCCTAGTCAAAGATGGACTGCTACAATGCTTCTCAACCATCCTTTTCTCTGTAATGGATCTAACATGCAACAAAGTTCATCATCCTTTTTCTCGTATGATATTTTTAATCACATGTCACGTAAGGGATAA 930 0.3903 MAVAWKKLATLGKGSFATVYLATLSLPQEPNDKEKVVAVKSSSHFSFSIVSMQKEKRILDLFIGCKEILQCYFDELTVDERKDFTYNLFMEVAPYGSLDYLIKKKGPLTESEVRAYTIMLLKGLSCIHQKGVVHCDLKPDNILLFPNSSEEKDDHEMLFQLKIADFGMSKTKEDLSNDADSKKTKFRGTPYYMSPESVVGVIEPALDIWSLGCIVIEMITGLRAWNLLTKTKEEIMYKLLVLEAAPKIPNGLNWVCKNFLNKCFVKDPSQRWTATMLLNHPFLCNGSNMQQSSSSFFSYDIFNHMSRKG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1298 309 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 293 - -
Aed5g1298 309 SMART serkin_6 5 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1298 309 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 293 - -
Aed5g1298 309 ProSitePatterns Protein kinases ATP-binding region signature. 11 40 IPR017441 GO:0005524
Aed5g1298 309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Aed5g1298 309 ProSiteProfiles Protein kinase domain profile. 5 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1298 309 SUPERFAMILY Protein kinase-like (PK-like) 5 293 IPR011009 -
Aed5g1298 309 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Aed5g1298 309 CDD STKc_MAPKKK 5 283 - -
Aed5g1298 309 Pfam Protein kinase domain 6 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1298 Aed-Chr5 12604441 12605370 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1298 5 283 MAP Kinase Kinase Kinase AT5G67080 40.845 2.21e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g1298 Pkinase 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1298 - - gmx:102664043 413.69