Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1296 ATGGGTGCTGAATGGAAGAAGTTAGAAATTTTAGGGAAGGGTTCTTATGCTACGGTTTATCTTGCAACTGTTTCTCTTCCACAAGAATCGACTGAAGAATCGACTGAGAAAGAGAAGGTTGTGGCCGTGAAGAGTTCAAGTCATTTCTCTTTTTCAATTCTTTCAATGCAGAAAGAAAAAAGAATCTTGGACTTGTTCATTGGGTGCAAAGAAATCATTCAATGCTATTTCGATGAATTAATTGTTGATGAGAGAAAGCATTTGACTTACAATCTTTTCATGGAGCTTGCACCTTACGGTTCTCTTGGTGATCTAATAAAGAAGAAGGGGCCACTGTCAGAGACGGAAGTGAGAATCTACACTAGCATGCTTCTTAAGGGGCTTTGTTGCATTCATCAAAAGGGTATTATACATTGCGATCTCAAACCAGACAACATCCTTCTGTTTCCTAATTCATCTGAGGAGAAAGATGATCGTGAAGTGTTGTTTCAACTGAAGATTGCTGATTTTGGAATGTCCAAGACTAAAGAAGATCCTTCAAATGATGCTGAATCTAAGAAGATCAAGTTTAGAGGGACCCCTTATTACATGTCACCAGAATCGGTCTTTGGTGTGATCGAGCCAGCTTTGGATATATGGTCTCTTGGGTGCATTGTGATTGAGATGATGACCGGATTGCGTGCATGGTGGAACCTAATAATGAAAACGAGAGAGGAGATGATGCGCAAGCTTGTAGTTCTTGAAGAAACACCAGAAATACCCAATGGACTGAGCTTGGTTGGCAAGAATTTCTTGAGCAAGTGTTTCACAAAGGATCCTAGTCAGAGATGGACTGCTACAATGCTTCTGAACCATCCTTTTCTCTGCTTTGGATTTAACACGTAA 885 0.4023 MGAEWKKLEILGKGSYATVYLATVSLPQESTEESTEKEKVVAVKSSSHFSFSILSMQKEKRILDLFIGCKEIIQCYFDELIVDERKHLTYNLFMELAPYGSLGDLIKKKGPLSETEVRIYTSMLLKGLCCIHQKGIIHCDLKPDNILLFPNSSEEKDDREVLFQLKIADFGMSKTKEDPSNDAESKKIKFRGTPYYMSPESVFGVIEPALDIWSLGCIVIEMMTGLRAWWNLIMKTREEMMRKLVVLEETPEIPNGLSLVGKNFLSKCFTKDPSQRWTATMLLNHPFLCFGFNT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1296 294 SUPERFAMILY Protein kinase-like (PK-like) 4 289 IPR011009 -
Aed5g1296 294 ProSitePatterns Protein kinases ATP-binding region signature. 11 44 IPR017441 GO:0005524
Aed5g1296 294 Pfam Protein kinase domain 6 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1296 294 ProSiteProfiles Protein kinase domain profile. 5 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1296 294 SMART serkin_6 5 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1296 294 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
Aed5g1296 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Aed5g1296 294 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 288 - -
Aed5g1296 294 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 288 - -
Aed5g1296 294 CDD STKc_MAPKKK 4 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1296 Aed-Chr5 12426582 12427466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1296 4 288 MAP Kinase Kinase Kinase AT4G36950 40.138 6.50e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g1296 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1296 - - gmx:102664043 385.571