Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1295 ATGGCTGCTGCATGGAAGAAGTTGGAGATTTTAGGGAAGGGTTCTTATGCTACGGTTTATCTTGTTGCTCTTCCACAGCAAGAAGATCAATCGAATGAGAAGATAGTAGCGGTGAAGAGTTCAAGTCCTTTCTCTTTCTCAATTGTTTCAATGCAGAAGGAAAAGAGAATCTTGGACTCGTTCATTGGTTGCAAAGAAATCCTTCAATGCTATTTCGACGAACTAATTGTTGATGAGAGAAACTACTTCACTTACAATCTTTTCATGGAGCTTGCACCCTACGGTTCTCTTGGTGATTTAATAAGGAAGAAGGGATCACTGTCGGAGAATGAAGTGAGAGTCTACACTATCATGCTTCTCAAAGGGCTTTCTTGCATTCATCAGAAGGGAGTTGTACATTGTGATTTTAAACCAGACAACATCCTTCTGTTTCCTTCTTCCGAGGATGATGATGATCATGGAATGTTTCAACTCAAGATTGCTGATTTTGGATTGTCCAAGACTAAAGAAGATGATCTTTCTTCAAAGGGTGATGAGTGTGGGAAGAAGATCAAGTTTAGAGGGACGCCTTATTACATGTCGCCTGAATCGGTTGTTGGTGTGATCGAACCAGCATTGGATATATGGTCTCTTGGCTGCATTGTGATTGAGATGTTCACTGGATTGCGTGCTTGGAGGAACCTGATAACAGGGACGAAAGAGGAGGTGATGTACAAGCTTGCGGTTCTTCAAGAAGCACCAGAGATCCCCAATGGAGTACTGAGCTTGGATTGCAAGAATTTCTTGAGCAAGTGTTTCACGAAGGATCATAGTCTGAGATGGACTGCTAAAATGCTTCTCAACCATCCTTTTCTCTGTAATGGATCTAACATGCAACAAAGAGCTATGTTTGGCTCATCATCCTTTTTCTCATATGATGTTTTTAATCATGAGTCACTTAAGGTATAA 948 0.4103 MAAAWKKLEILGKGSYATVYLVALPQQEDQSNEKIVAVKSSSPFSFSIVSMQKEKRILDSFIGCKEILQCYFDELIVDERNYFTYNLFMELAPYGSLGDLIRKKGSLSENEVRVYTIMLLKGLSCIHQKGVVHCDFKPDNILLFPSSEDDDDHGMFQLKIADFGLSKTKEDDLSSKGDECGKKIKFRGTPYYMSPESVVGVIEPALDIWSLGCIVIEMFTGLRAWRNLITGTKEEVMYKLAVLQEAPEIPNGVLSLDCKNFLSKCFTKDHSLRWTAKMLLNHPFLCNGSNMQQRAMFGSSSFFSYDVFNHESLKV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1295 315 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 293 - -
Aed5g1295 315 ProSitePatterns Protein kinases ATP-binding region signature. 11 39 IPR017441 GO:0005524
Aed5g1295 315 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Aed5g1295 315 CDD STKc_MAPKKK 5 285 - -
Aed5g1295 315 ProSiteProfiles Protein kinase domain profile. 5 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1295 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Aed5g1295 315 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 293 - -
Aed5g1295 315 Pfam Protein kinase domain 6 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1295 315 SUPERFAMILY Protein kinase-like (PK-like) 5 295 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1295 Aed-Chr5 12420292 12421239 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1295 5 285 MAP Kinase Kinase Kinase AT4G36950 40.210 1.45e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g1295 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1295 - - gmx:102664043 426.787