Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1293 ATGGCTGTTGCATGGAAGAAGTTAGCAATTTTAGGGAAGGGCTCTTTTGCCACCGTTTATCTTGCTACTCTTTCTCTTCCACAAGAACCGAATGAGAAAGAGAAGGTTGTAGCCGTGAAGAGTTCAAAAAGAAAAAAAAATTCTGGACTTGTTCGTTGCAAAGAAATCCTTCAATGCTATTTTGATGAATTAACTGTTGATGAGAGAAAAGATTTCACTTACAATCTTTTCATGGAGGTTGCACCTTACGGTTCTCTTGATTATTTAATAAAGAAGAAGGGGCCACTGACAGAGAGTGAAGTGAGAGCCTACACTATCATGCTTCTCAAAGGGCTTTCTTGCATTCACCAAAAGGAAGTTGTTCATTGTGATCTTAAACCGGACAACATTCTTCTGTTTCCTAATTCATCTGAGGAGAAGGATGATCATGAAATGTTGTTTCAACTGAAGATTGCTGATTTTGGAATGTCCAAGACTAAAGAAGATCGTTCAAACGATGCTGACTATAAGAAGGTCAAGTTTAGAGGGACACCTTATTACATGTCACCGGAATCGGTTGTTGGTGTGATCGAACCGGCATTGGATATATGGTCTCTTGGATGCATTGTGATTGAGATGATAACCGGATTGCGTGCATGGAACCTGCTAACGAAAACGAAAGAGGAGATAATGTACAAGCTTTTAGTTCTTGAAGAAGCACCTAAAATACCCAATGGACTGAACTGGGTTTGCAAGAATTTCCTGAGCAAGTGTTTTGTGAAGGATCCTAGTCAGAGATGGACTGCTACAATGCTTCTCAACCATCCTTTTCTCTCTAATGGATCTAACGTGCAACAAAGTTCATCATCCTTTTTCTCATATGATATTTTTAAATATGTGTCACGTAAATAA 891 0.3895 MAVAWKKLAILGKGSFATVYLATLSLPQEPNEKEKVVAVKSSKRKKNSGLVRCKEILQCYFDELTVDERKDFTYNLFMEVAPYGSLDYLIKKKGPLTESEVRAYTIMLLKGLSCIHQKEVVHCDLKPDNILLFPNSSEEKDDHEMLFQLKIADFGMSKTKEDRSNDADYKKVKFRGTPYYMSPESVVGVIEPALDIWSLGCIVIEMITGLRAWNLLTKTKEEIMYKLLVLEEAPKIPNGLNWVCKNFLSKCFVKDPSQRWTATMLLNHPFLSNGSNVQQSSSSFFSYDIFKYVSRK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1293 296 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1293 296 SMART serkin_6 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1293 296 ProSiteProfiles Protein kinase domain profile. 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1293 296 ProSitePatterns Protein kinases ATP-binding region signature. 11 40 IPR017441 GO:0005524
Aed5g1293 296 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 280 - -
Aed5g1293 296 Gene3D Transferase(Phosphotransferase) domain 1 2 292 - -
Aed5g1293 296 SUPERFAMILY Protein kinase-like (PK-like) 5 278 IPR011009 -
Aed5g1293 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Aed5g1293 296 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1293 Aed-Chr5 12389578 12390500 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1293 5 272 MAP Kinase Kinase Kinase AT5G67080 39.223 6.27e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g1293 Pkinase 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1293 - - gmx:102664043 380.563