Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1223 ATGCACAAATTCTCTTTTCAGCTTTGGTTTATCAACTTGCATGTAATTATACTTGGGATCACTGCAGCTAATGAGAGTTCTGAAGTTAAGGGCATAATAGGAGCTATTTTGGATAGCAGTTCTCGCATTGGGCAAGAGCATGCAGTGGCTATGAAGCTGGCATTGGAAGACTTTCATCTCAAAAACAATCTGAATTTTACTCTGCATGTGAGAAATTCTCAAGGGGATCCTCTTTTGGCAGCTATTGCAGCTAGAGATCTGATTGATAATGAAAAGGTGGAAGCCATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTCTGTACCCAAAAGAACATACCTCTCCTTTCTCTATCAGATTCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTTCTGCAGTCCTCACCTAGCCAAATTATGCAGATGAAAGCTATTGCTCAAATTTTGAAATCTTGGAAACTCTATAATATTACCATGATATACGAAGATGGAGACTCATCATCCACCGAAGTTTTGTCTCAGCTCTCTGGAGCTCTCACAGAAGTTGGCACAAAATTAAGCAGTGTTGTGGCAATTCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAGCTAAGAGAAGGTCAATGCAGAGTCCTCATTGTCCATTTGTCCTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAAAGAATGAATATGATGGAGGGAGGTAATGTGTGGATTACTACTGGTACATTTACAAGCCTAGTTCATTCTTTGAATGCATCCACTATCTCTAATATGCAAGGGGTTATTGGAGTCAAGAGCTATATCCAAAAACTATTGCCCCAGTATGCAGACTTCTACCATAGGTTTCGGAAAATTTTTAGGTCAGAGAATTTTGAAGAGTTTAATTATGAGCCTGGGATCTTTGCAGCTCAGGCTTATGAAGCAGCTAGGGTTGTGGTTGATGCAATGAGGGAAGCCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTCTGCGTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACAACAAATTAGCTCCAGCACATACTTTTCAAATAATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGAAATTTCTCAAAATCCTTGGATGAAAATGCTTCTAACAGTTCGTCAGTGATGGAATTGGGAAGAGTAGTTAATCCAACATGTGCCATACGACTAAGAATTGGTGTCCCCACCAAATCAGCAATCAAACAGTATGCCAATGTTATTGAAGAACATTATGGAAATGCCACTTCCTTCAAGTTCAAGGGATTTGCTATAGAACTTTTCAAAAAAACAGTAAAAGAATTGCCATACCATCTGGAATATGATTATATTCCGTTTAATGGCAACACGTATGATGAAATGGTGAAGAAAGTTTTTGAGAAGGAATATGATGCAGTTGTTGGTGATGTAACAATAGTGTCTCCGCGTTATGAATATGTTTCATTCAGTCAGCCCTTTACTGATACGGGACTGGTGATGATTGTTCCTGTCAAATCAAAGACAGCCAATAGAACATGGTTATTCATGAAGCCTTTCACAACGCTCATGTGGGTTCTAATATTGGTCATCATTGTCTACAATGGCTTTGTTATATGGTTTATTGAAAGAAACCACTGCCCTGAACTGAAGGGCCCTATTCTCCACCAAACCACAACTATGCTGTGTTTGGCTTTCAGTTCTCTGTTCTCTTTGAATGGGGACAAAATGCACAGCAATTTATCAAGGGTGGCAATGGTGGTCTGGTTTCTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACAGTTAGAAGCAACTGTAGACAGCATTGAGAAGCTAAAGAGCAGCAATGCCATGGTAGGATATGATAGAGGGTCCTACTTGAAAATCTATCTACAGGATGTATTGGGCATCAAAGCTGAAAACATCAAGCAGTATGACTCACTGGAGTGCTTTGCTGATGCCCTAAGAAACAAAGAAATTGCAGCTGCCTTCTTCGATATGCCTGCGGCCAAAATTTTCCTTGCAAGGAACTGTGAAGGGTTTGTTCAAGCAGGGCCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCATGACATAAACCAAGCCCTACTGAACATATCTGAAAATGGCACACTACGTAATCTAGAAAACGAGATGCTTGATTTACAGGAATGTAAAGACATAACTGACCCAGATGTAGAAACTTCTAGTCTTAGTCCTGAAAGCTTCATGGTACTCTTCCTCCTAACTGGAGGCACTTCAACAACTGCTCTCGTACTTTACATATTTTCTGTGAATTATATTTGCCCTGGACAAAGAACAATCTGGACAAATGAGAGTTCTGATGTTAGGGGAATAATAGGAGCTATTTTGGATAACAGTTCTCGCATTGGCCAAGAGCATGCAGTGGCTATAAATCTGGCATTGGAAGACTTTCATGTCAAAAGCAATCTGAGTTTTGCTCTGCATGTAAGAAACTCTCAAGGAGATCCTCTTTTAGCAGCTATTGCAGCTAGAGATCTCATTGATAATCAAAAGGTGCAGGCCATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTCTGTACCCAAAAGAGCATACCTCTCCTTTCTCTATCAGATTCAACTCCAGAATGGGCAATGAAGAAGCAGCACTTCCTTCTGCAGTCCTCACCTAGCCAAATTATGCAGATGAAAGCTATTGCTCAAATTGTGAAATCTTGGAGACTCTTTAATATTACCATGATATATGAAGATGGAGACTCATCATCCACTGAAGTTTTGTCTCAGCTCTCTGGAGCTCTCACAGAAGTTGGCACAAAATTAAGCAGTGTTGTAGCAATTCCACCTCTAGTTTCTTCTTCATTGTCCCAACAACTTGAGAAGCTAAGAGAAGGTCAATGCAGAGTCCTTATTGTCCATTTGTCCTTTCCTTTGGCACAACACCTGTTTGAAACTGCAAAAAGAATGAATATGATGGAGGGAGCCCAGGCTTATGATGCTGCATGGATTGTGGTTGATGCAATGAGGGAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTACTTAGTAATTTTACTGGTTTAAGTGGAAAAATTCAGTTCACTGACAATAAATTAGCTCCAGCACATACTTTTCAAATAATTAATGTGATGGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGAAAATTCTCAAAATCCTTGGATGAAAATGCTTTTAAGAGTTCCTCAGTGATGGAATTAGGAAAAGTAGTTAATCCAACATGTGCCATACGACTAAGAATTGGTGTCCCTTCCAAATCAACATGCAAACACTATGTCAATGTTATTGAAGAACATTCTGGAAATGTCACTTCCTTCAAGTTCAATGGATTTGCTATAGATATTTTCCAAGAAACAGTAAAAAAATTGCCCTACCATCTGGAATACGATTATTTTGCCTTTAATGGTACCAAGTATGATGAACTGGTGAAGAAAGTTTTTGAGAAGGAATATGATGCAGTTGTTGGTGATGTAGCAATAGTGTCAGCACGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATCCAGGAGTGGTGATGATTGTTCCTGTTAAATCAAAAACAGGCAACAGAGCGTGGCTATTCACAAAGCCTTTCACAAAGCTCATGTGGGTTCTAATATTGATTATCATTGTCTACAATGGCGTTGTTGTATGGTTTATTGAAAGAAACCACTGCCCTGAACTAAAGGGCCCTATTCTGCACCAAACCACAACTATGCTGTGGTTGGCATTCTATTCTCTGTTCTCTTTAAATGGGGACAGAATGCACAGCAATTTATCTAGGGTAGCAATGGTGGTCTGGCTTTTTGTGGCTCTAATCATTACACAGATTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAAAAGTTTGAAGCAACTGTAGACAGCCTTGAGAAGCTAAAGAGCAGCAATGCCATGGTAGGACATGATAGAGGGTCCTACTTGCAAAGATATCTCCAGGATGTATTGGGCATCAAAGCTGAAAACATGAAGCTATATGACTCAGAGGAGAGATATGCTGATGCCTTAAGAAACAAAGAAATAGCAGCTGCCTTCCTTGATATGCCTGAGGCCAAAATTTTCCTTGCAAAGAACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCATGACATAAACCAAGCCCTACTGAACATATCTGAAAATGGCACACTACGTAATCTAGAAAACGAGATGCTTGATTTACAGGAATGTAAAGACATAACTGACCCAGATGTAGAAACTTCTAGTCTTAGTCCTGAAAGCTTCATGGTACTCTTCCTCCTAACTGGAGGCACTTCAACAACTGCTCTCGTACTTTACATATTTTCTGTGAATTATATTTGCCCTGGACAACGAACAATGTGGAGTATAATGATGTCTGTGATTAAAAGTTGGAGATCTCACAAGAGACTGTTTTCAAGAAGAGTTCACAATGCTGCAGAAAGTCCTTTAAACTCTTTCAACATTTCTATTTTGCATGCTTCAGTTTAA 4737 0.4003 MHKFSFQLWFINLHVIILGITAANESSEVKGIIGAILDSSSRIGQEHAVAMKLALEDFHLKNNLNFTLHVRNSQGDPLLAAIAARDLIDNEKVEAIIGPQTWAETSLVAEVCTQKNIPLLSLSDSTPEWAMKKWHFLLQSSPSQIMQMKAIAQILKSWKLYNITMIYEDGDSSSTEVLSQLSGALTEVGTKLSSVVAIPPLVSSSLSQQLEKLREGQCRVLIVHLSFPLALHLFETAKRMNMMEGGNVWITTGTFTSLVHSLNASTISNMQGVIGVKSYIQKLLPQYADFYHRFRKIFRSENFEEFNYEPGIFAAQAYEAARVVVDAMREANQKGGQLLLDKILRSNFTGLSGKIQFTDNKLAPAHTFQIINVIGRSYREIGFWSDGNFSKSLDENASNSSSVMELGRVVNPTCAIRLRIGVPTKSAIKQYANVIEEHYGNATSFKFKGFAIELFKKTVKELPYHLEYDYIPFNGNTYDEMVKKVFEKEYDAVVGDVTIVSPRYEYVSFSQPFTDTGLVMIVPVKSKTANRTWLFMKPFTTLMWVLILVIIVYNGFVIWFIERNHCPELKGPILHQTTTMLCLAFSSLFSLNGDKMHSNLSRVAMVVWFLVALIITQTYTASLASMLTVEQLEATVDSIEKLKSSNAMVGYDRGSYLKIYLQDVLGIKAENIKQYDSLECFADALRNKEIAAAFFDMPAAKIFLARNCEGFVQAGPTYKIGGYGFVFPRGSPLLHDINQALLNISENGTLRNLENEMLDLQECKDITDPDVETSSLSPESFMVLFLLTGGTSTTALVLYIFSVNYICPGQRTIWTNESSDVRGIIGAILDNSSRIGQEHAVAINLALEDFHVKSNLSFALHVRNSQGDPLLAAIAARDLIDNQKVQAIIGPQTWAETSLVAEVCTQKSIPLLSLSDSTPEWAMKKQHFLLQSSPSQIMQMKAIAQIVKSWRLFNITMIYEDGDSSSTEVLSQLSGALTEVGTKLSSVVAIPPLVSSSLSQQLEKLREGQCRVLIVHLSFPLAQHLFETAKRMNMMEGAQAYDAAWIVVDAMRETNQKGGQLLLDKILLSNFTGLSGKIQFTDNKLAPAHTFQIINVMGRSYREIGFWSDGKFSKSLDENAFKSSSVMELGKVVNPTCAIRLRIGVPSKSTCKHYVNVIEEHSGNVTSFKFNGFAIDIFQETVKKLPYHLEYDYFAFNGTKYDELVKKVFEKEYDAVVGDVAIVSARYEYASFTQPYTDPGVVMIVPVKSKTGNRAWLFTKPFTKLMWVLILIIIVYNGVVVWFIERNHCPELKGPILHQTTTMLWLAFYSLFSLNGDRMHSNLSRVAMVVWLFVALIITQIYTASLASMLTVEKFEATVDSLEKLKSSNAMVGHDRGSYLQRYLQDVLGIKAENMKLYDSEERYADALRNKEIAAAFLDMPEAKIFLAKNCKGFVQAGPTYKIGGYGFVFPRGSPLLHDINQALLNISENGTLRNLENEMLDLQECKDITDPDVETSSLSPESFMVLFLLTGGTSTTALVLYIFSVNYICPGQRTMWSIMMSVIKSWRSHKRLFSRRVHNAAESPLNSFNISILHASV 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1223 1578 Pfam Bacterial extracellular solute-binding proteins, family 3 1169 1478 IPR001638 -
Aed5g1223 1578 Gene3D - 143 386 - -
Aed5g1223 1578 Pfam Bacterial extracellular solute-binding proteins, family 3 446 755 IPR001638 -
Aed5g1223 1578 CDD GluR_Plant 417 758 - -
Aed5g1223 1578 Pfam Ligand-gated ion channel 1479 1513 IPR001320 GO:0015276|GO:0016020
Aed5g1223 1578 Gene3D - 415 531 - -
Aed5g1223 1578 Gene3D - 823 990 - -
Aed5g1223 1578 SUPERFAMILY Periplasmic binding protein-like II 1169 1478 - -
Aed5g1223 1578 SUPERFAMILY Periplasmic binding protein-like I 32 388 IPR028082 -
Aed5g1223 1578 CDD GluR_Plant 1140 1481 - -
Aed5g1223 1578 PANTHER GLUTAMATE RECEPTOR 1038 1568 - -
Aed5g1223 1578 PANTHER GLUTAMATE RECEPTOR 22 817 - -
Aed5g1223 1578 Pfam Ligand-gated ion channel 756 790 IPR001320 GO:0015276|GO:0016020
Aed5g1223 1578 SUPERFAMILY Periplasmic binding protein-like I 825 1112 IPR028082 -
Aed5g1223 1578 SMART GluR_14 1142 1483 IPR001320 GO:0015276|GO:0016020
Aed5g1223 1578 SMART GluR_14 419 760 IPR001320 GO:0015276|GO:0016020
Aed5g1223 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 821 1036 - -
Aed5g1223 1578 Gene3D - 997 1087 - -
Aed5g1223 1578 Gene3D - 1379 1483 - -
Aed5g1223 1578 CDD PBP1_GABAb_receptor_plant 33 393 IPR044440 -
Aed5g1223 1578 Gene3D - 35 365 - -
Aed5g1223 1578 PANTHER GLUTAMATE RECEPTOR 821 1036 - -
Aed5g1223 1578 Gene3D - 1254 1378 - -
Aed5g1223 1578 Gene3D - 532 654 - -
Aed5g1223 1578 Gene3D - 655 759 - -
Aed5g1223 1578 Gene3D - 1140 1253 - -
Aed5g1223 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1038 1568 - -
Aed5g1223 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 817 - -
Aed5g1223 1578 SUPERFAMILY Periplasmic binding protein-like II 445 755 - -
Aed5g1223 1578 Pfam Receptor family ligand binding region 1039 1096 IPR001828 -
Aed5g1223 1578 Pfam Receptor family ligand binding region 841 1036 IPR001828 -
Aed5g1223 1578 Pfam Receptor family ligand binding region 49 374 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1223 Aed-Chr5 10974634 10984963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1223 10 841 Ion Channels AT2G29120 30.665 1.31e-119 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1223 - - gmx:100818623 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1223 5 10974634 10984963 Aed5g1223 5 10974634 10984963 ECH