Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1222 ATGCATGTAATTATACTTGGGAATACTGCAACTAATAAGAGTTCTTCAGATTTTAAGGACATAATAGGAGCTATTTTAGATAGCAGCTCTCGCATTGGCCAAGAGCATGCAGTGGCAATGAAGCTTGCATTGGAAGATTTCTATCAGAAAAGCAATCAGAGTTTTTCTCTGCATATAAGAAACTCTCAAGGAGATCCTCTTTTGGCAGCTATGGCAGCAAGAGATCTGATTGATAATGAAAAGGTGGAAGCCATCATTGGACCACAAACATGGGCAGAGACATCACTAGTGGCTGAAGTCTGTACCCAAAAGAGCATACCTCTCCTTTCTCTATCAGATTCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTTCTGCAATCCTCACCTAGCCAAATTATGCAGATCAAAGCCATTGCTCAAATTCTAAAGTCTTGGAAACTCTATAACATTACCATCATATATGAAGATGGCGACTCATCATCCACTGAAGTTTTGTCTCAACTCTCTGGAGCTCTTACAGAAGTTGGCACAGAATTAAGCAATGTTGTAGCAATTCCACCTCTAGTTTCTTCTTCATTGTCACATCAACTTGAGAATTTAAGAGAAGGACAATGTAAAGTCTTTATTGTCCATTTATCCTTACCTGTGGCACTACACCTCTTTGAAACTGCTAAAAGAATGAATATGATGGGGAAAGGTAGTGTATGGATTACTACTAGTGCATTTACAAGCCTTGTTTATTCATTGAATACATCCACTATCTCAAATATGCAAGGGGTTATTGGAGTCAAGAGCTACATCAAAAAACTATTGCCCCAGTATGCAGACTTCTACCATAGATTTCGGAAAATTTTTAGCTCAGAGAATTTTAAAGAGTTTCATTATGAGCCTGGGATCTTTGCAGCTCAGGCTTATGATGCAGCTAGGATTGTGGTTGATGCAATGAGGGAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTGCTTAGTAATTTTACTGGTTTAAGTGGAAAAATTCAGTTCACTGACAATAAATTAGCTCCAGCACATACTTTTCAAATAATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGAAAATTCTCAAAATCCTTGGATGAAAATGCTTCTAACAGTTCCTCAGTGATGGAATTGGGAAGAGTAGTTAATCCAACATGTGCCATACGACTAAGAATTGGTGTCCCCACCAAATCAGCAATCAAACAGTATGTCAATGTTATTCAAGAACATTCTGGAAATGCCACTTCCTTCAAGTTCAAGGGATTTGCTATAGAACTTTTCAAAAAAACAGTAAAAGAATTGCCATACCATCTGCAATATGATTATATTGCGTTTGATGGCACCGTGTATGATGAAATGGTGAAGAAAGTTTTTGAAAAGGAATATGATGCAGTTGTTGGTGATGTAACAATAGTGTCTCCGCGTTATGAATATGTTTCATTCAGTCAGCCCTTTACTGATACGGGACTGGTGATGATTGTTCCTGTCAAATCAAAGACAGCCAATAGAACATGGCTATTCATGAAGCCTTTCACAACGCTCATGTGGGTTCTAATATTGGTCATCATTGTCTACAATGGCTTTGTCATATGGTTTATTGAAAGAAACCACTGCCCTGAACTGAAGGGCCCTATTCTCCACCAAACCACAACTATGCTGTGTTTGGCTTTCAGTTCTCTGTTCTCTTTGAATGTGGACAAAATGCACAGCAATTTATCAAGGGTGGCCATGGTGGTCTGGTTTCTTGTGGCTCTAATAATTATACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAAAAGTTTGAAGCAACTGTAGACAGCCTTGAGGAGCTAAAGAGAAGCAATGCCTTGGTAGGATGTGATAGAGGGTCCTACTTGAAAATCTATCTAGAGGAGGTATTGGGCATCAAAGCTGCAAACATCAAGCAGTATGACTCACTGGAGTGCTATGTTGATGCCCTAAGAAACAAATCAATAGCAGCTGCCCTCTTGGATATGCCTGCGGCCAAAATTTTCCTTGCAAAGAACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAATTTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCATGACATAAACCAAGCCCTACTGAACATATCTGAAAATGGCACACTACGTAATCTAGAAAACGAGATGCTTGCATCACAGGAATGTAAAGACATAACTGACCCAGATGTAGAACCTTCTAGTCTTAGCCCTGCAAGCTTCATGGTACTCTTCATCCTAACTGGAGGCACTTCAACAACTGCTCTTGTACTTCACATATTTTCTGTGAATTATATTTGCCCTGGACAAAGAACAATGTGGAGCCTAATGATGTCTGTGATTAAAAGTTGGAGATCTCCCAAGAGACCGTTTTCAAGAGAGTTCATAATGTTGCAGAAAGTCCTTTAA 2496 0.3966 MHVIILGNTATNKSSSDFKDIIGAILDSSSRIGQEHAVAMKLALEDFYQKSNQSFSLHIRNSQGDPLLAAMAARDLIDNEKVEAIIGPQTWAETSLVAEVCTQKSIPLLSLSDSTPEWAMKKWHFLLQSSPSQIMQIKAIAQILKSWKLYNITIIYEDGDSSSTEVLSQLSGALTEVGTELSNVVAIPPLVSSSLSHQLENLREGQCKVFIVHLSLPVALHLFETAKRMNMMGKGSVWITTSAFTSLVYSLNTSTISNMQGVIGVKSYIKKLLPQYADFYHRFRKIFSSENFKEFHYEPGIFAAQAYDAARIVVDAMRETNQKGGQLLLDKILLSNFTGLSGKIQFTDNKLAPAHTFQIINVIGRSYREIGFWSDGKFSKSLDENASNSSSVMELGRVVNPTCAIRLRIGVPTKSAIKQYVNVIQEHSGNATSFKFKGFAIELFKKTVKELPYHLQYDYIAFDGTVYDEMVKKVFEKEYDAVVGDVTIVSPRYEYVSFSQPFTDTGLVMIVPVKSKTANRTWLFMKPFTTLMWVLILVIIVYNGFVIWFIERNHCPELKGPILHQTTTMLCLAFSSLFSLNVDKMHSNLSRVAMVVWFLVALIIIQTYTASLASMLTVEKFEATVDSLEELKRSNALVGCDRGSYLKIYLEEVLGIKAANIKQYDSLECYVDALRNKSIAAALLDMPAAKIFLAKNCKGFVQAGPTYKFGGYGFVFPRGSPLLHDINQALLNISENGTLRNLENEMLASQECKDITDPDVEPSSLSPASFMVLFILTGGTSTTALVLHIFSVNYICPGQRTMWSLMMSVIKSWRSPKRPFSREFIMLQKVL 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1222 831 Gene3D - 670 712 - -
Aed5g1222 831 SUPERFAMILY Periplasmic binding protein-like I 21 375 IPR028082 -
Aed5g1222 831 PANTHER GLUTAMATE RECEPTOR 15 825 - -
Aed5g1222 831 Gene3D - 521 651 - -
Aed5g1222 831 SMART GluR_14 408 749 IPR001320 GO:0015276|GO:0016020
Aed5g1222 831 CDD PBP1_GABAb_receptor_plant 22 382 IPR044440 -
Aed5g1222 831 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 825 - -
Aed5g1222 831 Gene3D - 132 376 - -
Aed5g1222 831 Gene3D - 404 520 - -
Aed5g1222 831 PIRSF IGluLR_plant 320 801 IPR017103 -
Aed5g1222 831 PIRSF IGluLR_plant 1 325 IPR017103 -
Aed5g1222 831 Gene3D - 23 354 - -
Aed5g1222 831 SUPERFAMILY Periplasmic binding protein-like II 407 744 - -
Aed5g1222 831 CDD GluR_Plant 406 747 - -
Aed5g1222 831 Gene3D - 713 744 - -
Aed5g1222 831 Pfam Ligand-gated ion channel 745 779 IPR001320 GO:0015276|GO:0016020
Aed5g1222 831 Pfam Bacterial extracellular solute-binding proteins, family 3 435 744 IPR001638 -
Aed5g1222 831 Pfam Receptor family ligand binding region 38 363 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1222 Aed-Chr5 10961056 10967821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1222 22 803 Ion Channels AT2G29120 31.010 5.97e-120 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1222 - - gmx:100818623 1314.67