Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1221 ATGCACAAGTATGCTTTTCTGCTTTGGTTTATGAACATACATGTAATTATACTTGGGAGTACTGCAACTAATGAGAGTTCTTCTGATTTTAAGGGCATAATAGGAGCTATTTTAGATAGCAGCTCTCGCATTGGCCAAGAGCATGCAGTGGCTATGAAGCTTGCATTGGAAGATTTCTATCAGAAAAGCAATCACAGTTTTTCTCTGCATATAAGAAACTCTCAAGGGGATCCTCTTTTGGCAGCTATGGCAGCTAGAGATCTGATTGATAATGAAAAGGTGGAAGCCATCATTGGACCACAAACATGGGCAGAGACATCTTTAGTGGCTGAAGTCTGTACCCAAAAGAGCATACCTCTCCTTTCTCTATCAGATTCAACTCCAGAATGGGCAATGAAGAAGTGGCACTTCCTTCTGCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCCATTGCTGAAATGGTGAAGTCTTGGAAACTGTACAACATTAGCATCATGTATGAAGATGGAGACTCATCATCATCTAAAATTTTATCTCAGCTCTCTGGAGCTCTTACTAAAGTTGGCACAGAATTAAGCAAAGTTGTAGCAATTCTACCTCTGGTTTCTTCTTCGTTGTCCCAACAACTAGAGAATTTAAGAGAAGGACAATGTAAAGTCTTTATTGTCCATTTATCCTTTCCTTTGGCACTACACCTATTTGAAACTGCTAAAAGAATGAATATGATGGGAGAAGGTAATGTATGGATTACTACTAGTACATTTACAAGCCTTGTTTATTCCTTGAATGCATCCACTATCTCCAATATGCAAGGGATTATTGGGGTCAAGAGCTCTATTCCAAAACTATTGCCTCAGTATGCAGACTTCTACCAAAGATTTCGGAAAAAATTTAACTCGGAGAATTTTGAAGAGTTTAATTATGAGCCTGGAATCTTTGCAGTCCAGGCTTATGATGCTGCAAGGATTGTGATTGATGCAATGAGGAGAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTGCTTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGAACATGGAAGAGCTCCAGCACATATTTTTAAAATTATTAATGTGATAGGGAGGAGCTACAGGGAAATTGGATTCTGGTCTGATGGACTTGGTTTCTCAAAAACTTTGGATCAAAATGCTTCTTACAATTCTTCGGTGAAGGAATTAGGAAGAGTAGTTAATCCAACATGTGCCATACGACTGAGAATTGGTATCCCCTCCATGTCAAACTTCAAACAGTATGCCAATGTTATTCAAGATCATTCAGAAAATGTTACTTCCTTCAAATTCAAGGGATTTTCCATAGAACTTTTTGATGAAACAGTAAAAAAATTGCCATACCATCTGGAATATGATTATTTTGGCTTTAATGGCACTTATGATGAGCTGGTGATGCAAGTTTATTTGAAGCCATACACTGACACGGGACTCATGATGATTGTTCCTGTTAAATCAAAGACAGGCGATAGAACATGGATGTTCATGAAGCCTTTCACAAAGGTCATGTGGATTCTAATATTGGTCATCATTGTCTACAATGGCTTTGTTGTATGGATTATTGAAAGAAACCACCACCCTGAACTGAAGGGGCCTATTCTGCATCAAACCACAACTATGTTGTCTTTGGCTTTCTGTTCTTTGTTTTCTTTGAATGGGGACAAGTTACATAGCAATTTATCAAGGGTGGCAATGGTGGTCTGGTTTTTTGTGGCTCTAATCATTACACAGATTTACACTGCTAGCCTTGCCAGCATGTTAACTGTTGAACGGTTTGAACCGACTGTAGACAGCATTCAGCAGCTGAAGAACAACAATGCCAAGGTAGGATGTGATAGAGGATCCTACTTGCAAAGATATCTCCAGGATGCATTGGCCATCAATGCCAATAACATCAAACAGTTTCACTCCATGGAGAGCCTTGCTGATGCACTAAGAAGCAAAGAAATAGCAGCTGTCTTCCTTGATGTTCCTGTGGCAAAAATTTTCCTTGCAAAGTACTGTAAAGGGTTTGTTCAAGCAAGGCCTACATACAAAATTGGAGGATATGGATTTGTATTTCCAAAGGGATCTCCATTGCTTCATAGTGTAAACCAGGCCCTACTGAACATATCTGAAAGTGGCACACTACGTGATCTAGAAAACAGTATGCTTGCATCACAAGAATGTAAAGACATAACTAACCCTGGTGAAGAAACTACTAGTCTAAGCCCTACCAGTTTCATGGTGCCCTTCATCCTAACTGGAGGCACTTCAACAATTGCACTCTTAATTTACATATTTTCTGCGAATTATTTGTACCATGGACACAGAACAATGTGGAGACTAATGATGGCTGTGATTAAACGTTGGAGATCTCATAAGAGATTGTTTTCAAGAAAAGTCCACAGTGTTGGATCAGAAAGTCCTTTAAACTCTTCCAGCATTTCTAATTTGCCAGATTTAGCTTAA 2505 0.3892 MHKYAFLLWFMNIHVIILGSTATNESSSDFKGIIGAILDSSSRIGQEHAVAMKLALEDFYQKSNHSFSLHIRNSQGDPLLAAMAARDLIDNEKVEAIIGPQTWAETSLVAEVCTQKSIPLLSLSDSTPEWAMKKWHFLLQSSPSQIMQMKAIAEMVKSWKLYNISIMYEDGDSSSSKILSQLSGALTKVGTELSKVVAILPLVSSSLSQQLENLREGQCKVFIVHLSFPLALHLFETAKRMNMMGEGNVWITTSTFTSLVYSLNASTISNMQGIIGVKSSIPKLLPQYADFYQRFRKKFNSENFEEFNYEPGIFAVQAYDAARIVIDAMRRTNQKGGQLLLDKILLSNFTGLSGKIQFTEHGRAPAHIFKIINVIGRSYREIGFWSDGLGFSKTLDQNASYNSSVKELGRVVNPTCAIRLRIGIPSMSNFKQYANVIQDHSENVTSFKFKGFSIELFDETVKKLPYHLEYDYFGFNGTYDELVMQVYLKPYTDTGLMMIVPVKSKTGDRTWMFMKPFTKVMWILILVIIVYNGFVVWIIERNHHPELKGPILHQTTTMLSLAFCSLFSLNGDKLHSNLSRVAMVVWFFVALIITQIYTASLASMLTVERFEPTVDSIQQLKNNNAKVGCDRGSYLQRYLQDALAINANNIKQFHSMESLADALRSKEIAAVFLDVPVAKIFLAKYCKGFVQARPTYKIGGYGFVFPKGSPLLHSVNQALLNISESGTLRDLENSMLASQECKDITNPGEETTSLSPTSFMVPFILTGGTSTIALLIYIFSANYLYHGHRTMWRLMMAVIKRWRSHKRLFSRKVHSVGSESPLNSSSISNLPDLA 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1221 834 Gene3D - 417 494 - -
Aed5g1221 834 PIRSF IGluLR_plant 1 491 IPR017103 -
Aed5g1221 834 PIRSF IGluLR_plant 487 829 IPR017103 -
Aed5g1221 834 SUPERFAMILY Periplasmic binding protein-like I 33 387 IPR028082 -
Aed5g1221 834 Gene3D - 505 646 - -
Aed5g1221 834 Pfam Bacterial extracellular solute-binding proteins, family 3 489 733 IPR001638 -
Aed5g1221 834 Gene3D - 35 366 - -
Aed5g1221 834 SMART GluR_14 419 738 IPR001320 GO:0015276|GO:0016020
Aed5g1221 834 Pfam Ligand-gated ion channel 734 768 IPR001320 GO:0015276|GO:0016020
Aed5g1221 834 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 825 - -
Aed5g1221 834 Pfam Receptor family ligand binding region 50 375 IPR001828 -
Aed5g1221 834 CDD GluR_Plant 419 736 - -
Aed5g1221 834 Gene3D - 647 743 - -
Aed5g1221 834 Gene3D - 144 386 - -
Aed5g1221 834 PANTHER GLUTAMATE RECEPTOR 23 825 - -
Aed5g1221 834 SUPERFAMILY Periplasmic binding protein-like II 448 733 - -
Aed5g1221 834 CDD PBP1_GABAb_receptor_plant 34 395 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1221 Aed-Chr5 10939388 10944612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1221 4 792 Ion Channels AT2G29120 29.733 6.01e-108 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1221 - - gmx:100820229 1320.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1221 5 10939388 10944612 Aed5g1221 5 10939388 10944612 ECH