Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1218 TGGTGGAGCAGATCCGGGGAGTCAATTAACAATTTTATTGGAGGAAACTATTCAGGTCAGCACTTTCAACCAGCTGCTCCTCTCTGGCCGCAGATATTTCCCCATCCTCCTCCTCCACAACAGTACCAGTGGTTTGATAATCAAACACGTTATGTGCAAGAGATCAGAGGTGACTCCATCATCTTTTATCCTCCAACAAATCCTTCAATCCTCATACAAGATGCTATTGACATGGGAGCTAGGCATGTTGGCCCTGCACCATATGCACGTATACACCACCAGAGAACTCTTGGACCTCAAAATCTTCCTCCTGCAGCATTGTTTCTCCAATATGATGAGCTGCTTGCATTAGGTGAACGGATTGGCGATGTAAAATCGGGTTTGTCAGAAAACATAATTACAAGTCAGATGAAGACAAAAACTTGTTTACTACCTACCAGTGCTACTAACTCGGAGGAACCTGATTGTTGCGTAATTTGTCAGGATGAATATCAGAATCAAGACAAGCTTGGAGTTCTTCATTGCGGACACGAATATCACGCAGACTGTCTAAAGAAATGGTTACTCGAGAAAAATGTTTGCCCCATATGCAAATCAAAGGCATTGACACTAGTTAGTTAA 621 0.4283 WWSRSGESINNFIGGNYSGQHFQPAAPLWPQIFPHPPPPQQYQWFDNQTRYVQEIRGDSIIFYPPTNPSILIQDAIDMGARHVGPAPYARIHHQRTLGPQNLPPAALFLQYDELLALGERIGDVKSGLSENIITSQMKTKTCLLPTSATNSEEPDCCVICQDEYQNQDKLGVLHCGHEYHADCLKKWLLEKNVCPICKSKALTLVS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1218 206 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Aed5g1218 206 SMART ring_2 157 197 IPR001841 -
Aed5g1218 206 SUPERFAMILY RING/U-box 151 201 - -
Aed5g1218 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 111 203 IPR045191 GO:0061630
Aed5g1218 206 Pfam Ring finger domain 156 198 IPR001841 -
Aed5g1218 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 202 IPR013083 -
Aed5g1218 206 PANTHER OS04G0185500 PROTEIN 111 203 - -
Aed5g1218 206 Coils Coil 206 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1218 Aed-Chr5 10905900 10906994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1218 109 202 C3H Transcription Factor Family AT2G15530 53.125 2.55e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1218 K19041 - gmx:100808448 199.904