Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed5g1218 | TGGTGGAGCAGATCCGGGGAGTCAATTAACAATTTTATTGGAGGAAACTATTCAGGTCAGCACTTTCAACCAGCTGCTCCTCTCTGGCCGCAGATATTTCCCCATCCTCCTCCTCCACAACAGTACCAGTGGTTTGATAATCAAACACGTTATGTGCAAGAGATCAGAGGTGACTCCATCATCTTTTATCCTCCAACAAATCCTTCAATCCTCATACAAGATGCTATTGACATGGGAGCTAGGCATGTTGGCCCTGCACCATATGCACGTATACACCACCAGAGAACTCTTGGACCTCAAAATCTTCCTCCTGCAGCATTGTTTCTCCAATATGATGAGCTGCTTGCATTAGGTGAACGGATTGGCGATGTAAAATCGGGTTTGTCAGAAAACATAATTACAAGTCAGATGAAGACAAAAACTTGTTTACTACCTACCAGTGCTACTAACTCGGAGGAACCTGATTGTTGCGTAATTTGTCAGGATGAATATCAGAATCAAGACAAGCTTGGAGTTCTTCATTGCGGACACGAATATCACGCAGACTGTCTAAAGAAATGGTTACTCGAGAAAAATGTTTGCCCCATATGCAAATCAAAGGCATTGACACTAGTTAGTTAA | 621 | 0.4283 | WWSRSGESINNFIGGNYSGQHFQPAAPLWPQIFPHPPPPQQYQWFDNQTRYVQEIRGDSIIFYPPTNPSILIQDAIDMGARHVGPAPYARIHHQRTLGPQNLPPAALFLQYDELLALGERIGDVKSGLSENIITSQMKTKTCLLPTSATNSEEPDCCVICQDEYQNQDKLGVLHCGHEYHADCLKKWLLEKNVCPICKSKALTLVS | 206 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed5g1218 | 206 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
Aed5g1218 | 206 | SMART | ring_2 | 157 | 197 | IPR001841 | - | |
Aed5g1218 | 206 | SUPERFAMILY | RING/U-box | 151 | 201 | - | - | |
Aed5g1218 | 206 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 111 | 203 | IPR045191 | GO:0061630 | |
Aed5g1218 | 206 | Pfam | Ring finger domain | 156 | 198 | IPR001841 | - | |
Aed5g1218 | 206 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 202 | IPR013083 | - | |
Aed5g1218 | 206 | PANTHER | OS04G0185500 PROTEIN | 111 | 203 | - | - | |
Aed5g1218 | 206 | Coils | Coil | 206 | 206 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed5g1218 | Aed-Chr5 | 10905900 | 10906994 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed5g1218 | 109 | 202 | C3H Transcription Factor Family | AT2G15530 | 53.125 | 2.55e-29 | 112 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed5g1218 | K19041 | - | gmx:100808448 | 199.904 |