Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1217 ATGATATCGAGGATTAAATTGCATGAACAACTCTCTATGATGAGTCAACAAAGGCATGGCTATTTTCAATCTGAAAGTATCCATTTCAGAGGAAGCAACAACTCTCAGCCTAATATCTGCACACTGGTGACGGCCTCGGGGAACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGGTGTATGGAATGACACAATACAATGGAGTTCAACCCCAACATAATCTTGATATGGGTGTTCCAGCTGCTGCCAACATATATTATTCTAGCATGAATCCTTCATCTAGCACGGCTGTTTCTCTAAATCCTGAAGCTATGAGAGGAAATTATCAATATTTCAATGCATTGGGTAGTTCTGCGGTTGCTCCCCCTAATGCAAGGCACACAGAAAATGGCATTCCCTCTCTACCACATTGTAGTTCGTGGAGCAGATCAGGGGAGTCTATGATGGTTCGTGACCCTAACCATATAATTCGAGGGAACTATTTAAGCCAACACTTTCAACCAGCTGCTCCTCCCTGGCTTGACCAACAGTTGAATAGCAGTAATAATGATGGTCACGCTTTGGCTTGGCATCAGTCTCTACCAATGCCATATGCACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCCACAGAGATATCATGATACAGCTGGCAGCAGAAGTGGTCACAGATTCCCCCATCCTCCTCTTGTCAACCCACAGTACCATAGCTTTCATCATCAAACACAGCCGGTGCAAGAGATGAGAGGTCACTCCATCAACTTTCATCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCATCACGCAGTTCTTCAGTCTTCATACAAGATGCTATTGAGATGGGTGCTAGGCATGTTGGCGCCACACCATTTGCGGGTTCACGTATATACCGACCTCAAAGAGGCAGCAGCATGCATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACCTTTCTCCAAGTTGATGATGTTACTTTATTGGTTGACAATCATAGTGATATGCGCTTGGACATTGAGGACATGTCTTATGAGGCAAGTATACATGGTTTGGAGCTTCTTGCATTAGGTGAGCGGATTGGAAAAGTAAACACAGGTTTGTCGGAGGAAATGATTATAAGTCAAATGAAGACAAGAACTTATTTATTACTACCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCTGAGGAACCGGAAACTGATTCCTGCATAATATGTCAGGATGAATATAAAAACCAAGAGAAGATTGGAATTCTTCAATGCGGGCACGAATATCATGCAGATTGTTTAAAGAAATGGTTACTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCACTGGATCCTGGAGAGAAGTGTTTATAA 1419 0.4257 MISRIKLHEQLSMMSQQRHGYFQSESIHFRGSNNSQPNICTLVTASGNGTNLDSHYLLDAYDNGMVYGMTQYNGVQPQHNLDMGVPAAANIYYSSMNPSSSTAVSLNPEAMRGNYQYFNALGSSAVAPPNARHTENGIPSLPHCSSWSRSGESMMVRDPNHIIRGNYLSQHFQPAAPPWLDQQLNSSNNDGHALAWHQSLPMPYAQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPQYHSFHHQTQPVQEMRGHSINFHPPVTAPSYRVPTNPSRSSSVFIQDAIEMGARHVGATPFAGSRIYRPQRGSSMHETTLRHRNLPPVTFLQVDDVTLLVDNHSDMRLDIEDMSYEASIHGLELLALGERIGKVNTGLSEEMIISQMKTRTYLLLPTNAINLEEAASEEPETDSCIICQDEYKNQEKIGILQCGHEYHADCLKKWLLVKNVCPICKSEALDPGEKCL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1217 472 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 109 468 - -
Aed5g1217 472 SMART ring_2 420 460 IPR001841 -
Aed5g1217 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 465 IPR013083 -
Aed5g1217 472 SUPERFAMILY RING/U-box 413 464 - -
Aed5g1217 472 ProSiteProfiles Zinc finger RING-type profile. 420 461 IPR001841 -
Aed5g1217 472 MobiDBLite consensus disorder prediction 205 241 - -
Aed5g1217 472 Pfam Ring finger domain 418 461 IPR001841 -
Aed5g1217 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 468 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1217 Aed-Chr5 10891589 10899842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1217 341 465 C3H Transcription Factor Family AT2G15530 47.200 8.35e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1217 K19041 - gmx:100808448 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1217 5 10891589 10899842 Aed5g1217 5 10891589 10899842 ECH