Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1216 TGGTGGAGCAGATCCGGGGAGTCAATTAACAATTTTATTGGAGGAAACTATTCAGGTCAGCACTTTCAACCAGCTGCTCCTCTCTGGCCGCAGATATTTCCCCATCCTCCTCCTCCACAACAGTACCAGTGGTTTGATAATCAAACACGTTATGTGCAAGAGATCAGAGGTGACTCCATCATCTTTTATCCTCCAACAAATCCTTCAATCCTCATACAAGATGCTATTGACATGGGAGCTAGGCATGTTGGCCCTGCACCATATGCACGTATACACCACCAGAGAACTCTTGGACCTCAAAATCTTCCTCCTGCAGCATTGTTTCTCCAATATGATGATGTTGTTGTACTGTCTGACCATCATACTGATATGTACTTGGACACTGAGGATATGTCTTATGAGGCAAGTGAACGGATTGGCGATGTAAAATCGGGTTTGTCAGAAAACATAATTACAAGTCAGATGAAGACAAAAACTTGTTTACTACCTACCAGTGCTACTAACTCGGAGGAACCTGATTGTTGCGTAATTTGTCAGGATGAATATCAGAATCAAGACAAGCTTGGAGTTCTTCATTGCGGACACGAATATCACGCAGACTGTCTAAAGAAATGGTTACTCGAGAAAAATGTTTGCCCCATATGCAAATCAAAGGCATTGACACTAGTTAGTTAA 675 0.4237 WWSRSGESINNFIGGNYSGQHFQPAAPLWPQIFPHPPPPQQYQWFDNQTRYVQEIRGDSIIFYPPTNPSILIQDAIDMGARHVGPAPYARIHHQRTLGPQNLPPAALFLQYDDVVVLSDHHTDMYLDTEDMSYEASERIGDVKSGLSENIITSQMKTKTCLLPTSATNSEEPDCCVICQDEYQNQDKLGVLHCGHEYHADCLKKWLLEKNVCPICKSKALTLVS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1216 224 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 34 222 - -
Aed5g1216 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 220 IPR013083 -
Aed5g1216 224 SUPERFAMILY RING/U-box 169 219 - -
Aed5g1216 224 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Aed5g1216 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 34 222 IPR045191 GO:0061630
Aed5g1216 224 SMART ring_2 175 215 IPR001841 -
Aed5g1216 224 Pfam Ring finger domain 174 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1216 Aed-Chr5 10886944 10888039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1216 109 220 C3H Transcription Factor Family AT2G15530 46.610 8.14e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1216 K19041 - gmx:100808448 227.254