Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1211 ATGAAGCTTCATTCGATGGTTTCCTTTAAAAATTACCTGCTTTATAAAAGAACAGAGAACCCATTGCATATCCTGAAACCTCGCAGCATGTTCTTTTTCTCACCGGAACCAAATGGTACCTTGAGACATTGCCATTCCCGGGTTAAAAATCTGAAATTTACACCAAACGAGAAGCCAAGAAAGGTGGGGCTTTTTTGGGACTTGGACAATAAGCCACCCAATTCAATCCCACCTTATGAAGTTGCAAATAAGCTGAGAATAGCTGCATCTTCATTTGGGGTTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTCAGCCATGTCCCTCACTCTGTGAGGGAGAGTAGGAAAGAGAAGGAACTGTTGCATCGTTTAGAGAACAAGGGTGTCATCAAGCTAAATCAACCTCATCGTTGTAAGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTTAACCATTTCAAACAATTGCATGAGCGTGAGCACATGAAGAGGATGAACCAGATAGAGTCTGCTAGGGGGAGCAGGAGGGTGAAGCTGGTGGCCAAGTATTCTATGAAAATGGACAAGTATAAGAAGGCTGCAAGTGATGTTCTCACTCCCAAAGTGGGGTATGGTTTGGCAGATGAGCTCCAAAGGGCTGGCTTTTGGGTTCGAACTGTGTTGGACAAGCCACAAGCTGCAGACCGAGCATTGCAAAGCCACATTGTGGATATCATGGATCATAGGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCTGACTTTGTTGATGTGATGCAGGAAGTCAAGATGCGGTGTTTGAAGACTGTTGTCATCGGGGATATTGATGATGGGTTCTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAGATTTTGATGGGGAAAGCTAAAAAGCAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATCTTGAAAAGTTTTAAAATGACTGTGAGGGTTGGGGAGCTGTCTCTATTGGAGAAGTTGCATCATTGTGGAAGGTATAAAGCATTGAAGGACATGAAAGATGAAATTTTGAAACAGCATGAGAACTTCATGATTTTGGCTTCTGGATACTGGTTCATCATTCTTCCAGATAAGCTCAGAGAGGGAGAAGAGCCAGATAAATACTATTTTCAAATGTATAACTATGTAGATGATTATGATAAAGGGGATAGTGGTGTCACTGTTGAAGAGCTCATGAAGAAAGCAGAGGAAAAGTACTGGCAACCAGGAGAAGACCGTTTCCTAAACAATCATTTTGAAGGGCCAGTGAAGTTATATGAGCAGATATTTGGTCCTAATGGACCTCAAACCATAGAGGACACACTGAACATACCAGAACCAGAAATAAGATACAAAGAATGGGCAGCAGAGCATGGACCTTCCCCTACTGCCATGATGGATAGTGGCAAGGAGTATGACATATATAATGTGATAGTTGATCCTCAATGGCAAGAGAAAGTTTGTGCTCTGGAACCTCTTGTACTGTCTGGTTTGAGACATGCAAAGGTAGGAAGGCTTGGATGCAAAAGTATAGTCCTGGCATTCCTCATGGCAGGAAGTACAGGGTCTACTTCAACACTCCAAATGGACCATTGGAGAGGGTGCCTGCTTGGGCTACATATGTCCTGCCAGATGGAAGGCAAGCTTAGGCAATCCACTGGGAACCACCCCCTGAGCAAGCATACAAATGGACAAATCCGAGTCCCAAAGTACCAAAATCCCTGTGGATATATGAAGCTCATGTCAGAATTAGTGGTTCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACATAAGGATTATTTTACTGTTGGGTTACGAATTTTTTTGCTGTTAGTAGTCAATATGGCACCCGAGGACTTCAAGCGATTAGTTGATGTGGCCCATGGACTAGGACTGCTTGTCTTCTTAGAAATTGTCCATTCATATGTAGCAGCAGATGAGATTGTCGGATTATCAATGTTTGATGGATCTAATGACTGCTTTTTTTGTTCTGGTAAACGAGGGCAACACAAATTTTGGGGAACCAGAATGTTCAAATATGATGACCCTGATGTTTTGCATTTCCTTCTATCAAACTTGAACTGGTGGATTGTGGAGTATCAAATTGATGGTTTTCAGTTCCATTCAGTTTCATCTATGATGTATACTCACAATAGTTTTGCTTCTTTTACTGGAGAATTGGAGGAGTACTGCAGCCAATATGTTGACAAGGATGTGCTAGTATATCTTATCTTGGCCAGTGATGCTCTTCACCCAAATATTATCACAATCGCAGAAGATGCAACATTTTATCCTGGATTATGTGAGCCAACTTCTCAAGGTGGATTAGGATTTGATTACTATGTCAACCTTTCTGTGCCTGATATGTGGTCAACTTTTCTTGAGAGTGTTCCTGATCATGAATGGAGCATATCTAAGATTGTTAACACATTAGTTTCCAATAAAGAATATGCTGATAAGATGCTATGTATGCTGAAAATCACAACCAGTCCATATCTGGAAGGTGATCATTTGCAGAAATATTGTTCGATGATCCGATTGATCACATCAACAATCGGTGGTCATGTCTATGTGAACTTCATGGGAAATGAATTTTGGCATCCAAAGAGAGTTGAATTTCCAACATCTAGCAACAACAACTCCTATTTGCTTGCCAATCGTCAGTGGGATCTTTTGACCAAAGATGGAGTTCATTGTGATTTATTTTCTTTTGATAAGTTGATCTACTCTTGGTATAAAAGTTATGTCATATCTTACATCAGAGGTCCCCTTCTCTTTGTTTTCAATTTCCATCCAAAAGATTCGCATAATAATTACAGCATAGGTGTAGAAGAAGCTGGGGAGTATCAAATTATTCTGAACACAGATGAATTAAAGTATGGTGGTCAAAGGATCCTTAAAGAAGAACAGTATTTTATAAAAACTATCAGCAGAAGAGTTGATGGCCTTCAAAACTGCTTAGAGGTGTCACTACCCAGCAGAACTGCTCAGGTTAAGTTAAGCCGGATTTTGAGAATATAA 3084 0.4089 MKLHSMVSFKNYLLYKRTENPLHILKPRSMFFFSPEPNGTLRHCHSRVKNLKFTPNEKPRKVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPHSVRESRKEKELLHRLENKGVIKLNQPHRCKVCGRKFHTNDKLVNHFKQLHEREHMKRMNQIESARGSRRVKLVAKYSMKMDKYKKAASDVLTPKVGYGLADELQRAGFWVRTVLDKPQAADRALQSHIVDIMDHRRVECVVLVSDDSDFVDVMQEVKMRCLKTVVIGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKSFKMTVRVGELSLLEKLHHCGRYKALKDMKDEILKQHENFMILASGYWFIILPDKLREGEEPDKYYFQMYNYVDDYDKGDSGVTVEELMKKAEEKYWQPGEDRFLNNHFEGPVKLYEQIFGPNGPQTIEDTLNIPEPEIRYKEWAAEHGPSPTAMMDSGKEYDIYNVIVDPQWQEKVCALEPLVLSGLRHAKVGRLGCKSIVLAFLMAGSTGSTSTLQMDHWRGCLLGLHMSCQMEGKLRQSTGNHPLSKHTNGQIRVPKYQNPCGYMKLMSELVVLPYIKEAGYNAIQLIGIVEHKDYFTVGLRIFLLLVVNMAPEDFKRLVDVAHGLGLLVFLEIVHSYVAADEIVGLSMFDGSNDCFFCSGKRGQHKFWGTRMFKYDDPDVLHFLLSNLNWWIVEYQIDGFQFHSVSSMMYTHNSFASFTGELEEYCSQYVDKDVLVYLILASDALHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSVPDMWSTFLESVPDHEWSISKIVNTLVSNKEYADKMLCMLKITTSPYLEGDHLQKYCSMIRLITSTIGGHVYVNFMGNEFWHPKRVEFPTSSNNNSYLLANRQWDLLTKDGVHCDLFSFDKLIYSWYKSYVISYIRGPLLFVFNFHPKDSHNNYSIGVEEAGEYQIILNTDELKYGGQRILKEEQYFIKTISRRVDGLQNCLEVSLPSRTAQVKLSRILRI 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1211 1027 ProSitePatterns Zinc finger C2H2 type domain signature. 141 162 IPR013087 -
Aed5g1211 1027 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 598 1019 IPR037439 GO:0003844|GO:0005978
Aed5g1211 1027 Pfam NYN domain 212 279 IPR021139 GO:0004540
Aed5g1211 1027 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 3, CHLOROPLASTIC/AMYLOPLASTIC 598 1019 - -
Aed5g1211 1027 Gene3D Glycosidases 575 935 - -
Aed5g1211 1027 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 167 IPR013087 -
Aed5g1211 1027 Pfam Alpha amylase, C-terminal all-beta domain 935 1019 IPR006048 GO:0003824|GO:0005975|GO:0043169
Aed5g1211 1027 Gene3D - 936 1023 IPR013780 -
Aed5g1211 1027 SUPERFAMILY (Trans)glycosidases 599 936 IPR017853 -
Aed5g1211 1027 Gene3D - 53 300 - -
Aed5g1211 1027 SUPERFAMILY beta-beta-alpha zinc fingers 136 165 IPR036236 -
Aed5g1211 1027 SUPERFAMILY Glycosyl hydrolase domain 933 1019 - -
Aed5g1211 1027 CDD PIN_LabA-like 150 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1211 Aed-Chr5 10847841 10856754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1211 344 1027 Glycoside Hydrolase AT3G20440 49.206 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g1211 Alpha-amylase_C 1.8e-18 CL0369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1211 K00700 - gmx:100780600 941.028