Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1209 ATGGGGGATTTCATCTTTTCCTTCAAAACTCAACAAGATCACCATGCACAAGCACACCAAAGTAGGGCAAAGCACAACAACAAAAAGAGGCTAACCGAGGACCAGGTTGCAGTTCTAGAGAAGTGCTTCGCCTCGAACGCGAAGCTCGAGCCGGAGCAGAAGTTCCACCTAGCAAACCAACTCGGCGTGCCACCGAGACAGGTCGCGATATGGTACCAGAACAAAAGGGCTCGATGGAAGACCCAGAGCCTCGAGGTGGACCACGGTGTGCTTCAGGCGAGGCTCGAGAATGTGGTGGCTGAAAAGAAGCAGCTTGAGAAAGATGTTGAGAGGCTCAAAGGTGAACTCAAGAAGGCTCAAGAGATGTTGCTAGTTAGCAACATTAACGTCAAAGGCGGCGGCAGCAACAATAATAATAATGGTTCTTGTGATTTTTCAACTTCTTTTGAAGAAGGAGGGAGTTCTGGGGTGGTGCTTGATGATGCAACTCATCACAATAATCATAATCATAATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTATATGCTTATTTCATGGGTGCAAATTATGGCTTGAATGAGAAAAGGGCATAA 609 0.4696 MGDFIFSFKTQQDHHAQAHQSRAKHNNKKRLTEDQVAVLEKCFASNAKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKGELKKAQEMLLVSNINVKGGGSNNNNNGSCDFSTSFEEGGSSGVVLDDATHHNNHNHNHECWQSGEVMQVEELYAYFMGANYGLNEKRA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1209 202 CDD homeodomain 28 83 IPR001356 GO:0003677
Aed5g1209 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 13 199 - -
Aed5g1209 202 SUPERFAMILY Homeodomain-like 10 83 IPR009057 -
Aed5g1209 202 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Aed5g1209 202 SMART HOX_1 24 86 IPR001356 GO:0003677
Aed5g1209 202 Pfam Homeodomain 27 80 IPR001356 GO:0003677
Aed5g1209 202 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Aed5g1209 202 Gene3D - 18 86 - -
Aed5g1209 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 199 IPR045224 GO:0003700
Aed5g1209 202 MobiDBLite consensus disorder prediction 9 30 - -
Aed5g1209 202 Coils Coil 88 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1209 Aed-Chr5 10818119 10818727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1209 20 161 Homeobox Transcription Factor Family AT5G53980 51.049 5.66e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aed5g1209 Homeodomain 6.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1209 - - gsj:114378167 317.39