Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1202 ATGGATAGCTACTATCATCAACCACAACACCACCACCACTCTCATCACTTTGACAACAACAGCAATAACAACAACAATGAACCACATTTACCTCCTGGCTTTAGATTCCACCCCACAGATGAAGAACTCATCACATACTACCTCCTCAAGAAGGACGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACACCACCGGCGGCGGCTCCACCGTGTCAACCACCAACGTTGGTAGTTCTAAGAAAACAAGAATGACCACATCAAACACTAGCAGCAACATGAGCCTGTGCCCCGAACCGGGTTCACCGTCTTCCATTTACCTTCCGCCGCTTCTAGAATCTTCTCCTTACGCCGCTGCCAGCACCACCACCACCACCGCCGCCGCCGCAACCTTCAACGACCGCGAAAGCTGCTCCTTCGATAGCGTCGCCAACAACAACAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGCCGCCGCCGCCTTCGACCACCTCGTACCGCCGCCAGAGCCGCCGCTCGACCCTTTCGCGCGCTTTCATCGTAACAACAACAACAGCAGCAGCAGCAACAACAACGTTGGTGTCGGAATCTCCAACAACTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACCTGCCCTTCTTTTTCTCTCCAACGGGCCACGTCAGCGCTGCTGACGTGGCATCATTCGGAGCCGTCGGGAACTGGCCAGCGCCGGATGAGCAGAGGGTGGTGTCTGACGGCGGCGCCGGCATGGCGATTGTACCGTCCGAGTTGGATTGCATGTGGGGCTATTGA 813 0.5523 MDSYYHQPQHHHHSHHFDNNSNNNNNEPHLPPGFRFHPTDEELITYYLLKKDEWVISRVFQKNTTGGGSTVSTTNVGSSKKTRMTTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAAASTTTTTAAAATFNDRESCSFDSVANNNNNNQREHVSCFSTISAAAAFDHLVPPPEPPLDPFARFHRNNNNSSSSNNNVGVGISNNFPCLRSLHDNLNLPFFFSPTGHVSAADVASFGAVGNWPAPDEQRVVSDGGAGMAIVPSELDCMWGY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1202 270 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 51 250 - -
Aed5g1202 270 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 51 250 - -
Aed5g1202 270 MobiDBLite consensus disorder prediction 65 99 - -
Aed5g1202 270 MobiDBLite consensus disorder prediction 1 36 - -
Aed5g1202 270 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 21 51 - -
Aed5g1202 270 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 51 - -
Aed5g1202 270 MobiDBLite consensus disorder prediction 1 18 - -
Aed5g1202 270 SUPERFAMILY NAC domain 17 51 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1202 Aed-Chr5 10673633 10675810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1202 15 51 NAC Transcription Factor Family AT5G53950 59.459 1.68e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed5g1202 NAM 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1202 - - gmx:100788671 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1202 5 10673633 10675810 Aed5g1202 5 10673633 10675810 ECH