Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1160 ATGAGTGATATTAGCTTGAGGCTATGGTTGGATAAACCAGAAAGATCAGTGAATGTGTTTGAATGCTTGCACATATTTAGGGAAATAGTGGAAATTGTTCATGTGGCTCATTCTCAAGGAGTTGTAGTTCACAATGTGAGGCCCTCATGCTTTGTCATGTCAACTTGTTCAGATTCTTCTGTCTCAGCTGATACTTTAGGAGGTGAAGACGATTTTGTGCCTGTCAAGACTTCAAATGTGATGGTGTTTGTGGCACCGGCATCATCGTCGATAGTAGATGACACAGAAGAAGAAAACAGAATGAAAAACAGAAGAAAGGATATTGAGGAAGTTGTTGTTGCAGGAAAGAAGCAATCATCTTTTGCAACTAAAGAGGTACTGCAGATGGAGGCATGTTGGTATACTAGTCCTGAAGAGGTTGCTGCTTCTGCTCCACCTTCACGTGCTTCGGACATTTACCGGTTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCATTCATATCAAGAGAAGAAAAGAGCAAAACCATGTCCAGTCTAAGACAAAGAGTTCTTCCACCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTAGTGTTATTGCATCCTGAGCCTAATAGTCGTCCAACAATAGGGGAGTTGTTGCAGAGTGAGTTTCTCAATGAACCAAGAGATGATATAGAAAAGTGTGAAGCAGCAGTAGAACTTAGAGAAAGGATAGATGACCAAGAGTTGCTGCTAGAATTCCTTTCATTGATTCAACAGAAAAAAAGAGAAGATGCTGAGAAGTTGCAACATACTATATCATTTCTGTGTACAGATATCGAAGAAGCAACTAAGCAGAAGAAAACTACATTTAAAGAGATATCTAGCACTGGACTAGGGAATGACGATTGTTCAACATCAAGTTTCCAATCCATTACTGTCGTTGAGAACGATGATTCTGCTTCTCCAGGTACCAAAAAACGGACCAGAACTGCAGGACATGGTAATAACATAGGCAATGATCAGAAAATTGACACTCACACGAGTATTCTTTCAAAAAGTCCGCGGTTTTTGAACAACTTAAAGAAACTAGAGTCAGCATACTTTCTGACGCGATGCAAATCGGCCTATTCCTCAGGGAAACTTGCGGTGCAAGATTCACCTATAGCATCAAAAGAGAAGTTCAGAGAAGGAAAAAGTCCTTGGACAAATCCCTTTCTTGAGGGTTTGTGCAAGTACCTATCTTTCAGCAAGTTAAAGGTCAAGGCTGATCTGAAACAAGGTGATCTCTTGCAGTCATCCAACCTGGTATGCTCACTCAGTTTCGATCGCGATGCAGAATTTTTCGCTATTGCAGGAGTGAATAAGAAGATCAAGGTTTTTGAATGCAACACAACCATAAATGAGAATCCTGATATACACTATCCTGTAGTTGAGATGTTTCCCCTTGACTTTGCTCATTTCCTTGCATTTGGTTCAGCAGATCATAGGATATATTACTATGATCTTCGCAACCCGAAAGTGCCTCTTTGTACATTAGTTGGACATGATAAGACAGTGAGCTACATCAAGTTCATAGACACCATGAGCCTTGTCTCTGCATCCACAGATAACACTTTGAAGCTTTGGGATTTGTCCATGTGCGCCTCAAGGGTGATAGACTCACCAATCCAATCATTCACTGGTCATATGAATGTTAAGGTGTTCATATACCACAAGGCTTTTCCCATGCCATCATTATCTTACAAATTTTTCAGTAGTGACCCTCTTTCTGGAAATGAAGAGGATGATTCTGCACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAATCCTCCACCTTACTTGCTGCAAATTCCACTGGGAATGTCAAAATTCTGGAGATGGCTTAA 1881 0.4072 MSDISLRLWLDKPERSVNVFECLHIFREIVEIVHVAHSQGVVVHNVRPSCFVMSTCSDSSVSADTLGGEDDFVPVKTSNVMVFVAPASSSIVDDTEEENRMKNRRKDIEEVVVAGKKQSSFATKEVLQMEACWYTSPEEVAASAPPSRASDIYRLGVLLFELFCPFISREEKSKTMSSLRQRVLPPQLLLKWPKEASFCLVLLHPEPNSRPTIGELLQSEFLNEPRDDIEKCEAAVELRERIDDQELLLEFLSLIQQKKREDAEKLQHTISFLCTDIEEATKQKKTTFKEISSTGLGNDDCSTSSFQSITVVENDDSASPGTKKRTRTAGHGNNIGNDQKIDTHTSILSKSPRFLNNLKKLESAYFLTRCKSAYSSGKLAVQDSPIASKEKFREGKSPWTNPFLEGLCKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEFFAIAGVNKKIKVFECNTTINENPDIHYPVVEMFPLDFAHFLAFGSADHRIYYYDLRNPKVPLCTLVGHDKTVSYIKFIDTMSLVSASTDNTLKLWDLSMCASRVIDSPIQSFTGHMNVKVFIYHKAFPMPSLSYKFFSSDPLSGNEEDDSAQFITSVCWRGQSSTLLAANSTGNVKILEMA 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1160 626 SUPERFAMILY WD40 repeat-like 431 624 IPR036322 GO:0005515
Aed5g1160 626 SUPERFAMILY Protein kinase-like (PK-like) 3 230 IPR011009 -
Aed5g1160 626 PANTHER PROTEIN SPA1-RELATED 2 478 625 IPR044630 GO:0009640
Aed5g1160 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 510 543 - -
Aed5g1160 626 Coils Coil 263 283 - -
Aed5g1160 626 Gene3D Transferase(Phosphotransferase) domain 1 3 233 - -
Aed5g1160 626 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1160 626 Gene3D - 480 626 IPR015943 GO:0005515
Aed5g1160 626 Gene3D - 405 479 IPR015943 GO:0005515
Aed5g1160 626 MobiDBLite consensus disorder prediction 313 340 - -
Aed5g1160 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 543 IPR001680 GO:0005515
Aed5g1160 626 PANTHER PROTEIN SPA1-RELATED 3 2 477 - -
Aed5g1160 626 ProSitePatterns Trp-Asp (WD) repeats signature. 528 542 IPR019775 -
Aed5g1160 626 SMART WD40_4 424 459 IPR001680 GO:0005515
Aed5g1160 626 SMART WD40_4 503 541 IPR001680 GO:0005515
Aed5g1160 626 SMART WD40_4 589 624 IPR001680 GO:0005515
Aed5g1160 626 PANTHER PROTEIN SPA1-RELATED 2 2 477 IPR044630 GO:0009640
Aed5g1160 626 PANTHER PROTEIN SPA1-RELATED 3 478 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1160 Aed-Chr5 9989196 9995978 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1160 - - gmx:100813635 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0604 1 7421275 7427832 Aed5g1160 5 9989196 9995978 ECH
Aed5g1160 5 9989196 9995978 Aed5g1160 5 9989196 9995978 ECH