Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1159 ATGGGTGGTGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGTCCAAGGGAGCGATTGTCGAGCAAGGCGGCTTTGATGGACTCTCGTGTGCCGAGGGGTGCGTCCTCGAGGAGGGAGGATGCATACAGGGTGAAGGATAGGTATGATGGCAATGATGTGAGGACTGCTTTGATTGATAAGCAAGGGAACGGTTCTGTCCGGCTGCAAGGTGAAAGTGTCGAGAGGAAGAGGGAGAGAATGGAGTGTGTTGTTGTTGCTGCTCAACAGCATCCTGGGGCTGGTAGTGTTCCCAAGGCCTTGGAAGGGGAGCAGGTTGCAGCTGGATGGCCATCCTGGCTAGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCGCGCCGTGCCGATTCGTTCGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTCGTGATCTTGAGCAAAAAAAAATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGGTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCCTGGTCACATCAAGGATGTCTTGCAGCTTATACCTAGTTTTTGAATACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACTGAAGCACAGGTAAAATGCTACATGCAGCAACTTTTACGAGGACTTGACCACTGCCATGGCTGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAACCTTTTGATTGACAATGATGGAATCTTGAAGATTGCAGACTTTGGTTTGGCAAGTGTTTTTGATCCAAATCAAACTCAGCCTTTGACAAGCCGAGTTGTCACTCTTTGGTATCGCCCACCAGAGCTTTTACTTGGTGCCACATACTATGGCACTTCTGTAGATTTATGGAGTACAGGCTGTATACTTGCTGAGTTATATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACAATATTTAAGCCCCAACAACCCTATAGGCGTTGTGTTGCTGACACATTCAAGGATTTCCCTGCACCTGCTTTAGCACTCATGGAGACTCTTTTGTCTGTAGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTGAAGAGTGAGTTCTTCACAACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTATCCTCCTAGCAAGGAATTTGATGCCAAACTACGGGATGAACAAGCAAGAAGGCAGGGGGCAACAGGAAGCAAGGGTCAGAGACATGACCTTGAAAGAAGAGGGGCAAGAGAATCTCGAGCTGTTCCGGCACCTGATGCCAATGCTGAACTGCCACTGTCAATGCAGAAAAGACAAAGTCTGGCTCAATCTAAAAGCAGAAGTGAGAAGTTTAATCCTCATCCTGAAGAAGCTTCTGGATTTACCATCGATCCCCCCAGACCGTCACAAGCTGTAGAAGTAGGTATAGAACCTCAGGTACCACAACATAAAAGAGCCTCGCATTCGGGTCCACTGGCTCACCGAGCTGCATGGGCTAAAGCTGGGAAGAACCAGGATGATGCTCCAAAGATTTCAGTTGGGGGTGATCTATCAACAATCTCAGGCTTAGTAGCAGCAAGGAGTATGCTGTCAGATGATCGCAGAGAAAGATCTGGATCGTCACAAACCGAGGCTTCAAAATTAATGAACAGGTTCCCAGGATCATTCAAGGACGTCTCTGAGTTGTCGATAAAACAGGATCAAAGGCACCATGTCCAGGGCCAAGTTGGCACTTCCCAAAAGGAAGAAGGGAGAAGCAGCAACAAAGACCTAGTTGGTTATGGTTCAAAGGGTCATAAAATTCATTACTCTGGTCCGTTGCTAGTTCCATCAAGCAACATGGATCAGGTGATGAAAGATCACGACCGCCAAATTCAAGAGGCGGTTAGACGGGCGCGCTTGGACAAGGCGAAAATGAGAAGGCTCCAAGCTGAAGGGAACAACCAGGTAACCAATTCATTATTTGTTTCCGGCCGTTGA 2139 0.4717 MGGVCCKPSAIEDSKESPRERLSSKAALMDSRVPRGASSRREDAYRVKDRYDGNDVRTALIDKQGNGSVRLQGESVERKRERMECVVVAAQQHPGAGSVPKALEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHGCGVLHRDIKGSNLLIDNDGILKIADFGLASVFDPNQTQPLTSRVVTLWYRPPELLLGATYYGTSVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVADTFKDFPAPALALMETLLSVDPADRGTAASALKSEFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEQARRQGATGSKGQRHDLERRGARESRAVPAPDANAELPLSMQKRQSLAQSKSRSEKFNPHPEEASGFTIDPPRPSQAVEVGIEPQVPQHKRASHSGPLAHRAAWAKAGKNQDDAPKISVGGDLSTISGLVAARSMLSDDRRERSGSSQTEASKLMNRFPGSFKDVSELSIKQDQRHHVQGQVGTSQKEEGRSSNKDLVGYGSKGHKIHYSGPLLVPSSNMDQVMKDHDRQIQEAVRRARLDKAKMRRLQAEGNNQVTNSLFVSGR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1159 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Aed5g1159 712 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Aed5g1159 712 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Aed5g1159 712 PANTHER CYCLIN-DEPENDENT KINASE 1 694 - -
Aed5g1159 712 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1159 712 MobiDBLite consensus disorder prediction 486 501 - -
Aed5g1159 712 SUPERFAMILY Protein kinase-like (PK-like) 129 427 IPR011009 -
Aed5g1159 712 Coils Coil 678 698 - -
Aed5g1159 712 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1159 712 MobiDBLite consensus disorder prediction 1 43 - -
Aed5g1159 712 Gene3D Transferase(Phosphotransferase) domain 1 218 458 - -
Aed5g1159 712 MobiDBLite consensus disorder prediction 447 473 - -
Aed5g1159 712 MobiDBLite consensus disorder prediction 581 605 - -
Aed5g1159 712 CDD STKc_CDK9_like 135 419 - -
Aed5g1159 712 MobiDBLite consensus disorder prediction 12 26 - -
Aed5g1159 712 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1159 712 PANTHER CELL DIVISION PROTEIN KINASE 1 694 - -
Aed5g1159 712 MobiDBLite consensus disorder prediction 447 569 - -
Aed5g1159 712 MobiDBLite consensus disorder prediction 618 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1159 Aed-Chr5 9966038 9974014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1159 127 476 Core Cell Cycle Gene Families AT5G10270 52.459 7.06e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed5g1159 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1159 - - gmx:100798022 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1159 5 9966038 9974014 Aed5g1159 5 9966038 9974014 ECH