Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1147 ATGGACCACAACAATAGGGTGCCAAGAAGAATCCGTGCATTCTCATCACCAACAACAGCACCACCACCTTCCCCTCCCATTCTCTCCTTCATTACTGCTCTTTCCATCACATCACTAATCTTCATGTGCCTCTACTTTTTATCAGCCTTTGCTTCCATAGCCATTCTTCTAGCCCTTTGCATCACCACCCTCTTCCTTTGCAAGTTCATGCATGATAGGAGTGAAAGAACCTCTTTTCAAGCACAAACCCAAGAGAATAACCAAAGGGTAGTGAGATTTTTCAATGAGCTTTTTTGGGTTGTTGAGGATAAAAAAACGGGTGGCAAGAGGCAACAAGTTAAGAAGAAGCTCCTAGGATGTGTTGTGTGTTTTGGAAACCAAGCAGCAATGGCATCATCATCATCATGTGTAAGTGAATGTGCGATTTGCTTGGAGGATTTTAAGAAGGGAGAGGAGTGCCTTGTTTTCTCAGTTTGTGGCCACACTTTTCATTTTGTTTGCATCAACCATTGGTTAGAGGAAAAACCCACATGCCCAATTTGCCGTCATTATATCCCATTATCCAGAAGCATGGAGAATCTAGTTTAG 588 0.4269 MDHNNRVPRRIRAFSSPTTAPPPSPPILSFITALSITSLIFMCLYFLSAFASIAILLALCITTLFLCKFMHDRSERTSFQAQTQENNQRVVRFFNELFWVVEDKKTGGKRQQVKKKLLGCVVCFGNQAAMASSSSCVSECAICLEDFKKGEECLVFSVCGHTFHFVCINHWLEEKPTCPICRHYIPLSRSMENLV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1147 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 186 - -
Aed5g1147 195 Pfam Ring finger domain 139 182 IPR001841 -
Aed5g1147 195 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Aed5g1147 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 193 IPR013083 -
Aed5g1147 195 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 4 186 - -
Aed5g1147 195 MobiDBLite consensus disorder prediction 1 22 - -
Aed5g1147 195 SMART ring_2 140 181 IPR001841 -
Aed5g1147 195 SUPERFAMILY RING/U-box 139 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1147 Aed-Chr5 9841930 9842517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1147 28 188 C3H Transcription Factor Family AT1G53010 30.058 4.25e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1147 - - lang:109363523 201.06