Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1144 ATGGAATCTAAATACTTTGACCCCAATGGAGAAGTCTCACTAAAGAAAAAAAAATCAAAATCCATTTCAACAGAGCCAACAATCTCTACTAGTGAAAATGATTGCTTTGATTGCAACATTTGCTTGGAATCAGCACATGACCCTGTGGTCACACTCTGTGGCCACCTTTACTGTTGGCCTTGCATATACAAGTGGCTTGATGTATCAAGCTCCTCTGTTGAACCAGACCACCACCACCACCACCACCAGCAGCAGCAGACATGCCCAGTTTGCAAATCTGAGATCTCTCAAACTTCAGTAGTCCCCCTCTACGGCCGTGGGTCGAACTCGGAATCCGACGACAAGAAACTCCAGATGAGTGTTGGAATTCCTCACAGGCCACCTCCTTCCAGCTTGAGTACCGTGTTAGCCTCTCCTCGCTTGCGGATTCCGCATGCTACTCAGCAATTGCATCCAAGTTATTTCCAGGCACAATCGAGACCGTTTCATTACCAGCAGTATTTGCCTAACCTTTATGGAAGTTATGGTACCAATGGATTGCCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTCAATCCTATGATTGGCATGTTTGGGGAAATGGTATTGACAAGGATTTTTGGGATCTCAGATGCAAATATGTTTGCTTACCCTCACAATGGAAGTGGCAGCCCTAGGATGAGAAGACAGGAAATGCAGATTGACAAGTCTCTGAACAGACTCTCTATCTTCCTCCTATGTTGCATCATTTTGTGTCTTCTCTTATTTTGA 774 0.4483 MESKYFDPNGEVSLKKKKSKSISTEPTISTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVSSSSVEPDHHHHHHQQQQTCPVCKSEISQTSVVPLYGRGSNSESDDKKLQMSVGIPHRPPPSSLSTVLASPRLRIPHATQQLHPSYFQAQSRPFHYQQYLPNLYGSYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGISDANMFAYPHNGSGSPRMRRQEMQIDKSLNRLSIFLLCCIILCLLLF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1144 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 5 257 - -
Aed5g1144 257 SMART ring_2 38 91 IPR001841 -
Aed5g1144 257 SUPERFAMILY RING/U-box 34 104 - -
Aed5g1144 257 MobiDBLite consensus disorder prediction 103 130 - -
Aed5g1144 257 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Aed5g1144 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 257 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed5g1144 257 ProSiteProfiles Zinc finger RING-type profile. 38 92 IPR001841 -
Aed5g1144 257 CDD RING-HC_AtRMA_like 36 93 - -
Aed5g1144 257 Pfam Zinc finger, C3HC4 type (RING finger) 38 91 IPR018957 GO:0046872
Aed5g1144 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1144 Aed-Chr5 9798191 9798964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1144 17 243 C3H Transcription Factor Family AT4G27470 47.639 1.51e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1144 K10666 - gmx:100817526 365.54