Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed5g1144 | ATGGAATCTAAATACTTTGACCCCAATGGAGAAGTCTCACTAAAGAAAAAAAAATCAAAATCCATTTCAACAGAGCCAACAATCTCTACTAGTGAAAATGATTGCTTTGATTGCAACATTTGCTTGGAATCAGCACATGACCCTGTGGTCACACTCTGTGGCCACCTTTACTGTTGGCCTTGCATATACAAGTGGCTTGATGTATCAAGCTCCTCTGTTGAACCAGACCACCACCACCACCACCACCAGCAGCAGCAGACATGCCCAGTTTGCAAATCTGAGATCTCTCAAACTTCAGTAGTCCCCCTCTACGGCCGTGGGTCGAACTCGGAATCCGACGACAAGAAACTCCAGATGAGTGTTGGAATTCCTCACAGGCCACCTCCTTCCAGCTTGAGTACCGTGTTAGCCTCTCCTCGCTTGCGGATTCCGCATGCTACTCAGCAATTGCATCCAAGTTATTTCCAGGCACAATCGAGACCGTTTCATTACCAGCAGTATTTGCCTAACCTTTATGGAAGTTATGGTACCAATGGATTGCCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTCAATCCTATGATTGGCATGTTTGGGGAAATGGTATTGACAAGGATTTTTGGGATCTCAGATGCAAATATGTTTGCTTACCCTCACAATGGAAGTGGCAGCCCTAGGATGAGAAGACAGGAAATGCAGATTGACAAGTCTCTGAACAGACTCTCTATCTTCCTCCTATGTTGCATCATTTTGTGTCTTCTCTTATTTTGA | 774 | 0.4483 | MESKYFDPNGEVSLKKKKSKSISTEPTISTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVSSSSVEPDHHHHHHQQQQTCPVCKSEISQTSVVPLYGRGSNSESDDKKLQMSVGIPHRPPPSSLSTVLASPRLRIPHATQQLHPSYFQAQSRPFHYQQYLPNLYGSYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGISDANMFAYPHNGSGSPRMRRQEMQIDKSLNRLSIFLLCCIILCLLLF | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed5g1144 | 257 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE | 5 | 257 | - | - | |
Aed5g1144 | 257 | SMART | ring_2 | 38 | 91 | IPR001841 | - | |
Aed5g1144 | 257 | SUPERFAMILY | RING/U-box | 34 | 104 | - | - | |
Aed5g1144 | 257 | MobiDBLite | consensus disorder prediction | 103 | 130 | - | - | |
Aed5g1144 | 257 | ProSitePatterns | Zinc finger RING-type signature. | 53 | 62 | IPR017907 | - | |
Aed5g1144 | 257 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 5 | 257 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Aed5g1144 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 38 | 92 | IPR001841 | - | |
Aed5g1144 | 257 | CDD | RING-HC_AtRMA_like | 36 | 93 | - | - | |
Aed5g1144 | 257 | Pfam | Zinc finger, C3HC4 type (RING finger) | 38 | 91 | IPR018957 | GO:0046872 | |
Aed5g1144 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 110 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed5g1144 | Aed-Chr5 | 9798191 | 9798964 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed5g1144 | 17 | 243 | C3H Transcription Factor Family | AT4G27470 | 47.639 | 1.51e-56 | 179 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed5g1144 | K10666 | - | gmx:100817526 | 365.54 |