Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1100 ATGAAGTCTACTAAAAGACAAAGAATTAGTGTAAAATACGAAGAAGAAGAACGGAGGGACAGTGAGATGCCACGGGACAGGTTGAGTGAGTTGCCGGAAAGTGTTATGCTCCATATCCTGAGGTTCATGGATACATCACAAGCTGTTCAGACCTCTGTCTTGTCCAAAAGATGGAACAATCTCTGGAAAAGTCTCCCCAGTTTCTCTTTCACACGTCGCGTTGGAGGCATTCAGAAATACAACAGACTTTTGTCTCAGTTTCTGTCTTGTCACCGCCGCCGAGAGGATGATTCTATTTCGCTGCTCAGTCTCAGCTTCATGGTCTACAACTCCACCGCACAGAGCAAACTCCTCAAGAATCTCATTGAACACGCTGCCTCGCACAACGTCCAGCAGTTGACAGTCAATGTAGATTTCAAACTTAAGAAAATGCCGAATTCATTCGTCCCTCTCCTCTCCGCCTGCCGCTCTCTCAAGTCTCTCAAGCTTTCCTTAGATCCCAACTCTATCTTGCTTATTCCAAAGACTCTGCTGTTACCGTCGTTGGAAAGCTTGGATCTTGACAATGTCTGCTTCACCGCGACTGACTGCACCACCACTCAGCCATTTTCAGCTTGCAGCTCTTTGAATACTTTGGTCCTACGACAATCCATACGACAATCCATGCGCATCGATGGCTTAGAGGACATGATACTTCATGATGTGCCAGTCTTCTGCATATCTAATTCAAACCTTTCCACTTTGAAGCTAGACAATGTGTTCACCTCCCAACCCAAAATTGTGCTTTCTACTCCGAAACTTACTTCCATCACAATCGTGGTTACTTACTATCCATGTTGTTACATACTTTCCTCCACGTGTGAACTTCCACTTCTTGAAGAAGTGAACATTCTCAGCAACGACACTGGTAACATAATGGATTCTTCGGTCATCGTAAGCTGGCTACGACTATTTTCTAATGTGAAGACACTAACAATGTCTTCAGGTACCCTTCATGCACTACTGAAGGATCTATCAAGTCTCGCTGCAAATAACATTCAGCCTCCATGTTTTGGTAGATTAGAGTCATTGAAGATGAAAATGAATCCATGCAGCAACAATATGATATCCAATCATGAAGCAGAGAAGATAACAAAGTACTTACTTTGGAATTCTCCACCAACCAGATCAGTTTCTGTCATACTGGAAGGACTTCTTAAACTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCATTCGATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTTCACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGGAAGGAATGAGAAACCAAAATCACCTTCTAGTTTCCGAGAAGAGAAAAGTTCTTCACATGGGCAAAAGCCTGTGGAAAGAGGTGGGCATACTTATGCAGTTGGGTCTGAGAATACTTTTGAACAAAGGAAAAAAATCCAACCATCAAATGCAATTCCTGCTACAAGATTTAGTGTAACTCCTGTGGCAAAACCTCAACATGTTGAGAAAGTGGAACTTGTTGCACCATCACCACAAGCTGAAACGTCAAAACAGACTACTGACACAATACAAAATTCCCCTCCAAAATTTGACTATGCTACAGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGAAGCTCATGCTACTGCAGATGATAACTGGGCAGCTGCTGCAGAGGCATCATCAGCCGAGAAAACTGATGCCACAAAAGCAGTTGAGAGTACACCCCAGCCCACACCCCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTGCACCAACTTCAACTCCGGAAAAACCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAAAAGTCCAACACGGTGTCTCCATTTGCAATTCAACAACAGCAGCTGGCCATGCTGGCTCAGCAACAGTCTCTTCTAATGGCGGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCTGCCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGCTGGTGGGGATTCCAAGTACTCGGCAGGCATACAACAACCTGGGTCCAATATCCAAAGTTGGCCCCCTGCTGGCTACCCAATGGCAGGTGCAATGCCCATGGGTGGTCAGGATGAGTTACAGAAATTCATGCAGGCAATGAACATGAATGCAGCACATTCAGCAGGGAGTTCAGTTCAGTATCCACCATCTAGTTACTATGGTATGGGACAAGTTGTTCCCACTAATGGTACGACGCCGCCGCCTTCGGGAGGAGCAGCAAGCAAACCTCAGTCAGCATCTCCGGTATCATCAACCACCTCAAAGACAGGGAGCGAGTACGATTTTTCCTCCTTAACACAAGGAATGTTTGGCAAACACTGA 2607 0.4453 MKSTKRQRISVKYEEEERRDSEMPRDRLSELPESVMLHILRFMDTSQAVQTSVLSKRWNNLWKSLPSFSFTRRVGGIQKYNRLLSQFLSCHRRREDDSISLLSLSFMVYNSTAQSKLLKNLIEHAASHNVQQLTVNVDFKLKKMPNSFVPLLSACRSLKSLKLSLDPNSILLIPKTLLLPSLESLDLDNVCFTATDCTTTQPFSACSSLNTLVLRQSIRQSMRIDGLEDMILHDVPVFCISNSNLSTLKLDNVFTSQPKIVLSTPKLTSITIVVTYYPCCYILSSTCELPLLEEVNILSNDTGNIMDSSVIVSWLRLFSNVKTLTMSSGTLHALLKDLSSLAANNIQPPCFGRLESLKMKMNPCSNNMISNHEAEKITKYLLWNSPPTRSVSVILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNEKANSYWEAELPSHYDRVGIENFIRAKYEEKRWVGRNEKPKSPSSFREEKSSSHGQKPVERGGHTYAVGSENTFEQRKKIQPSNAIPATRFSVTPVAKPQHVEKVELVAPSPQAETSKQTTDTIQNSPPKFDYATDLFDMLSMDDPNEKGSGEAHATADDNWAAAAEASSAEKTDATKAVESTPQPTPQSTSGIEDLFKDSPSVAPTSTPEKPQKDVKNDIMSLFEKSNTVSPFAIQQQQLAMLAQQQSLLMAAAKSAGGDPKYLAALQQQQSLLMAAAAAKSAGGDSKYSAGIQQPGSNIQSWPPAGYPMAGAMPMGGQDELQKFMQAMNMNAAHSAGSSVQYPPSSYYGMGQVVPTNGTTPPPSGGAASKPQSASPVSSTTSKTGSEYDFSSLTQGMFGKH 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1100 868 MobiDBLite consensus disorder prediction 820 868 - -
Aed5g1100 868 SUPERFAMILY RNI-like 129 369 - -
Aed5g1100 868 MobiDBLite consensus disorder prediction 7 27 - -
Aed5g1100 868 MobiDBLite consensus disorder prediction 500 530 - -
Aed5g1100 868 MobiDBLite consensus disorder prediction 628 681 - -
Aed5g1100 868 Pfam Putative GTPase activating protein for Arf 395 500 IPR001164 GO:0005096
Aed5g1100 868 ProSiteProfiles F-box domain profile. 25 73 IPR001810 GO:0005515
Aed5g1100 868 ProSiteProfiles ARF GTPase-activating proteins domain profile. 392 506 IPR001164 GO:0005096
Aed5g1100 868 CDD ArfGap 395 493 - -
Aed5g1100 868 MobiDBLite consensus disorder prediction 577 595 - -
Aed5g1100 868 SMART arf_gap_3 387 506 IPR001164 GO:0005096
Aed5g1100 868 MobiDBLite consensus disorder prediction 1 27 - -
Aed5g1100 868 Gene3D - 15 71 - -
Aed5g1100 868 PANTHER ARF GTPASE ACTIVATOR 730 867 - -
Aed5g1100 868 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 393 735 IPR044520 GO:0005096
Aed5g1100 868 MobiDBLite consensus disorder prediction 500 522 - -
Aed5g1100 868 PANTHER ARF GTPASE ACTIVATOR 393 735 - -
Aed5g1100 868 Pfam F-box domain 28 66 IPR001810 GO:0005515
Aed5g1100 868 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 730 867 IPR044520 GO:0005096
Aed5g1100 868 SMART fbox_2 31 71 IPR001810 GO:0005515
Aed5g1100 868 SUPERFAMILY ArfGap/RecO-like zinc finger 394 500 IPR037278 -
Aed5g1100 868 MobiDBLite consensus disorder prediction 572 597 - -
Aed5g1100 868 MobiDBLite consensus disorder prediction 820 860 - -
Aed5g1100 868 PRINTS HIV Rev interacting protein signature 404 423 IPR001164 GO:0005096
Aed5g1100 868 PRINTS HIV Rev interacting protein signature 444 465 IPR001164 GO:0005096
Aed5g1100 868 PRINTS HIV Rev interacting protein signature 423 440 IPR001164 GO:0005096
Aed5g1100 868 SUPERFAMILY F-box domain 23 68 IPR036047 GO:0005515
Aed5g1100 868 Gene3D Arf GTPase activating protein 384 507 IPR038508 -
Aed5g1100 868 MobiDBLite consensus disorder prediction 640 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1100 Aed-Chr5 9328769 9338311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1100 395 499 C2H2 Transcription Factor Family AT4G05330 48.673 9.51e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1100 K12486 - gmx:100807561 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1100 5 9328769 9338311 Aed5g1100 5 9328769 9338311 ECH