Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1089 ATGGAAGACTTGTCGTCATGCTTTCTGTGCGAGAAGAGGGCGATGATGATGTGCGACTCGGACCAGGCTAAGCTATGCTGGGACTGCGACGAGAAAGTTCACAGCGCCAATTTCCTGGTGGCGAAGCATTCGAGGGTTCTTCTGTGCCGCTTGTGCCACTCCCCCACTCCGTGGAAGGCTTCGGGGACCAGACTCGCCCGCACGGATGAGATGGCGTGCTCTTCATCTGAGACTACATTGCCCAGTGGTGTGATGAATCAACCTCTATGA 270 0.5556 MEDLSSCFLCEKRAMMMCDSDQAKLCWDCDEKVHSANFLVAKHSRVLLCRLCHSPTPWKASGTRLARTDEMACSSSETTLPSGVMNQPL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1089 89 Pfam B-box zinc finger 5 47 IPR000315 GO:0008270
Aed5g1089 89 SMART bboxneu5 2 48 IPR000315 GO:0008270
Aed5g1089 89 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 70 - -
Aed5g1089 89 PANTHER OS08G0178800 PROTEIN 6 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1089 Aed-Chr5 9217372 9218412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1089 7 68 C2C2-CO-like Transcription Factor Family AT4G27310 67.742 1.24e-24 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed5g1089 zf-B_box 8.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1089 - - pvu:PHAVU_011G1498000 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1089 5 9217372 9218412 Aed5g1089 5 9217372 9218412 ECH