Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1078 ATGTCTTTTATTTTTGTTTGTCTTTCAATTATATCTTGCGTATCTATTTCATTTCTCTCGGCAGATAAAGATGGATCAAGGATAAGGGTGATTGTGATCTCAAGTATTGTTTCATCTATTATTGCGATGCTTGTAGTATTCACGTTCTTTTACTGGAGAAGTAAGACCAAATTCGGAGGTAAAGATTTATATGGTATGCTTTATTTCAGTGGTTATATGGCACCTGAATATGCAATTGGTGGAGTTTTCTCCATCAAATCTGATGTCTATAGCTTCGGTGTTATATTACTAGAAGTTTTAAGTGGGAAGAGTAGCAAAGGGGTTTCCTTCTCAAACCACAACTATAATCTTATTGCTCATGTAAGTAGCATAATTAACTTCAATTTATATGTGATTAATTGA 402 0.3308 MSFIFVCLSIISCVSISFLSADKDGSRIRVIVISSIVSSIIAMLVVFTFFYWRSKTKFGGKDLYGMLYFSGYMAPEYAIGGVFSIKSDVYSFGVILLEVLSGKSSKGVSFSNHNYNLIAHVSSIINFNLYVIN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1078 133 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 71 121 - -
Aed5g1078 133 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 63 - -
Aed5g1078 133 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 63 - -
Aed5g1078 133 Pfam Protein tyrosine and serine/threonine kinase 72 105 IPR001245 GO:0004672|GO:0006468
Aed5g1078 133 Gene3D Transferase(Phosphotransferase) domain 1 46 129 - -
Aed5g1078 133 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 71 121 - -
Aed5g1078 133 SUPERFAMILY Protein kinase-like (PK-like) 65 105 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1078 Aed-Chr5 8885689 8887094 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1078 71 120 Receptor kinase-like Gene Family AT4G23230 56.000 2.75e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed5g1078 PK_Tyr_Ser-Thr 2.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1078 - - gmx:100792537 92.0485