Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1072 ATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAAACAGCGAGAAGCGTGAGGTTTGAGAGTGGGGAATCACAATCTTCTTCTTCTGGCCTCACAAACTATGCAACCTGGCAACAACAACAACAACATCATCATGAGATAGTAGCAACAACAACAAGGTGTTCTTCTTCTTCCATGGATATCTCTGCTGCTGCTGCTGCTTCAGGTGGTTCCTCTGTGCAAGTTCATCAGCCACATCATCATGACTCATCAGTAGCAGCTTCCACCAATGATCACTCCCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCACAGGGCATGGACTGGAATCAAGCATCTTTGCAGCTGCGAGGTGAGAAGGGGTCAGAGAGCAGTTTCAGGTCGATGTTGCAAGAGAATCTGAGCTCACAAGGCACAAATTTTCAGCAAGAAAGTGGGAGCAACAACATAGGGCTATCTCAACACCACCACCATCAACAACAGCAACAACAAGTTCATAATTGGAGGCCAGAAAAGCTGTTCTCTGCTGAGACATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTAGACCAAACACAGTTCAGTCCTCAATACAGCTCTGGGGACAGCACTGTCACAAGCCAAGGCTTGCCTTGTAATTCTTTTCAGATGGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTCTTAGGACAAGAGAACAATAACAACAACAACAACCAACAACAAGGTGGTGGTGCCATGAATTTTCCTTACTCAAGCTATGGTTTGAACTCCAATAATAGCATTGAGTTGGTTCCTTCTTGGTCCAAAGTTCCTCAGTTTCTGAGAGCTTCACCTCCAAAACAACCACCCAATAATAACAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTGGTTCTGAGCCTGCTATTAAGGATAATGCTCGATCCACCTTCATCCCCTCTTTGCAACCACCCTTCTCCACATCAAATTTCGATGTACAATCAAAGAATATATCTGAAGTCAGAGACTCTGGTGGTGTGGTGAAGAAAAGTGGGAGTGAGGCAGCACCAAAAAGGCCTAGGAGCGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTGCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCATATATGAAAAGTGGTGCTCCCATACTGCATCAACAGAGTTCTGGAAAATCTAAGGAATGTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTTCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCAACAGTTGAGTATTGGACACCAACGTTTGGAGGAACTTACAGATAG 1455 0.4529 MSDDQFQASGNWWETARSVRFESGESQSSSSGLTNYATWQQQQQHHHEIVATTTRCSSSSMDISAAAAASGGSSVQVHQPHHHDSSVAASTNDHSPNLHMMGLGLSSQGMDWNQASLQLRGEKGSESSFRSMLQENLSSQGTNFQQESGSNNIGLSQHHHHQQQQQQVHNWRPEKLFSAETSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCNSFQMDYVGNPSSILQGLLGQENNNNNNNQQQGGGAMNFPYSSYGLNSNNSIELVPSWSKVPQFLRASPPKQPPNNNNQLHFTNNAPFWNAGSEPAIKDNARSTFIPSLQPPFSTSNFDVQSKNISEVRDSGGVVKKSGSEAAPKRPRSETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPILHQQSSGKSKECEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1072 484 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 473 - -
Aed5g1072 484 MobiDBLite consensus disorder prediction 119 170 - -
Aed5g1072 484 CDD bHLH_AtbHLH_like 370 421 IPR045239 -
Aed5g1072 484 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 413 IPR011598 GO:0046983
Aed5g1072 484 SMART finulus 375 419 IPR011598 GO:0046983
Aed5g1072 484 MobiDBLite consensus disorder prediction 65 95 - -
Aed5g1072 484 Gene3D - 374 428 IPR036638 GO:0046983
Aed5g1072 484 MobiDBLite consensus disorder prediction 344 371 - -
Aed5g1072 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 427 IPR036638 GO:0046983
Aed5g1072 484 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1072 Aed-Chr5 8787036 8792376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1072 120 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.431 2.72e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1072 - - gmx:100797286 726.857