Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1049 ATGGCCATGGCGACGAGGGCAGCAGTGGCGGCGCCACGCGTTTTGCGGCGGTTTTTCTGCACAAACTCCACCTCTTCTTCTTTCCCCTTCGTTTCCACGTCGCCACTGGGCGCCACCCCCGCTCCCGGCAGACCCACGGCAGAGCCCAACACCAACCTCTTCGTCTCTGGTCTTAGCAAACGTACTACTACAGAAAGGCTTCGAGAGGAATTTACAAAGTTTGGTGATGTTGTTCATGCGAGGGTGGTTACTGACCGAGTCTCAGGTTACTCTAAGGGGTTTGGTTTTGTTCAATATGCTACAATAGAGGATGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCACCACCAGGACAAGCTCTAAATAACAACGGTTCTCAGTATGGTCGGCAGTGA 444 0.5225 MAMATRAAVAAPRVLRRFFCTNSTSSSFPFVSTSPLGATPAPGRPTAEPNTNLFVSGLSKRTTTERLREEFTKFGDVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQALNNNGSQYGRQ 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1049 147 Gene3D - 29 137 IPR012677 -
Aed5g1049 147 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 145 - -
Aed5g1049 147 SUPERFAMILY RNA-binding domain, RBD 45 146 IPR035979 GO:0003676
Aed5g1049 147 SMART rrm1_1 52 125 IPR000504 GO:0003723
Aed5g1049 147 PANTHER TRANSFORMER-2-RELATED 1 145 - -
Aed5g1049 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Aed5g1049 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1049 Aed-Chr5 8376603 8379381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1049 50 131 Eukaryotic Initiation Factors Gene Family AT4G34110 34.146 2.01e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1049 - - gmx:100784609 254.218