Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1034 ATGGAGAAAGAAGAGAAAAAGAAGATAAAGGGAAACATTAAGGATAATAGCATGCCAACAGTTTGGTTCTCTCTGAAGAAGTCTCTACACTGCAAATCTGAGCCATCTGAAGTTCATGACCCCAAAACAAGGAAGCAACTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGCTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTCATTTTGAGCAACTCAAGGTGTGAGCTTAAGATAACTGGCTATGGAGGGTTCCATGAAGGGGTTGCAAGTGGTGGTAGCAATGGTGGTGGTGGTGGAGGTAGTGGTGGTGGTTCAACTTTTGTGGGGACTTTGAGGCCTGGTACACCTGGCCCTGGAGGGCACCCTACAATGCATTACTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTCTATCAGATAAAGAAGGGTCTGGTGGTCTTCATGGTGTTGGACTTCATCCTAGCCATAGGTTGTCTCTTGAGACAGACTCTAATGGCTCTTCAACTGTGACTTGTCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGGTTCACAACATGCAAAGACTCTTGCAAGATTTGAAGAGTACAGAGAGATGGTGAAGATTAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTGGCAGATGGGAATGAACTCTTGAGGTTCTATGGCACCACTGTTTCATGCTCTCTTGGCCTCAATGGCTCTTCTAGCCTCTGCCTATCAGAAAAGTGCTGTGTTTGCAGAATCATAAGGAATGGCTTTTCAGCCAAGAAAGAGCTCAAGGGTGGCATTGGAGTCTTCACAACATCCACTAGTGGAAGAGCTTTTGAGTCCATAGAGATCATTGGTGAGGAACCATCATTGAGAAAAGCACTTATAGTGTGCAGAGTAATTGCTGGCAGGGTTCATAGGCCACTCGAGAACATTCAAGAAATGGCAGCACAAACAGGATTTGACTCATTGGCTGGGAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1230 0.452 MEKEEKKKIKGNIKDNSMPTVWFSLKKSLHCKSEPSEVHDPKTRKQLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFHEGVASGGSNGGGGGGSGGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGGLHGVGLHPSHRLSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAGSQHAKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVSCSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIIGEEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1034 409 ProSitePatterns Zinc finger C2H2 type domain signature. 214 235 IPR013087 -
Aed5g1034 409 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 241 409 - -
Aed5g1034 409 Gene3D - 207 408 - -
Aed5g1034 409 SUPERFAMILY ADP-ribosylation 252 408 - -
Aed5g1034 409 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 19 237 - -
Aed5g1034 409 PANTHER - 241 409 - -
Aed5g1034 409 PANTHER - 19 237 - -
Aed5g1034 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 240 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1034 Aed-Chr5 8187808 8190290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1034 18 409 C2H2 Transcription Factor Family AT5G54630 60.907 1.81e-171 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g1034 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1034 - - gmx:100785097 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1034 5 8187808 8190290 Aed5g1034 5 8187808 8190290 ECH