Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1029 ATGGTTTCCCGGGAAAACACCAACTGGCTCTTCGATTATGGCTTGATCGACGATATTCCCGTCACCGCCGATGCCGCCTTCACTGTCAACACCTCCGCCTTCGCTTGGCCCCCTAACGCCCTCAACGCTCCCTCCAATGTCGGTGTTGAAATTGATGGCTCATTGGGGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAGGAAAAGGGTTAGGTCTGAGTCATGTGCTGCTACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCAAAAACGGACAAGGCTGCTGTCCTGATTGATGCTGTCCGAATGGTGACCCAGTTACGGGGTGAAGCCCAGAAATTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGACTGAGAAGAATGAACTTCGCGACGAGAAACAGAGGCTCAAGGCAGAGAAGGAGAAACTAGAGCAGCAGCTGAAATCTTTGAATGTACAACCTAGTTTCATGCCTCCCCCTGCTGCAATCCCCGCTGCATTTGCGGCACAAGGCCAAGCCCATGGTAACAAGTTGGTACCTTTCATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTGCTCCGTCCACCCGTTGCCTAA 714 0.5014 MVSRENTNWLFDYGLIDDIPVTADAAFTVNTSAFAWPPNALNAPSNVGVEIDGSLGDSDGLKESGSRKRVRSESCAATSSKACREKLRRDKLNDKFVELGSILEPGRPAKTDKAAVLIDAVRMVTQLRGEAQKLKDTNQGLQEKIKELKTEKNELRDEKQRLKAEKEKLEQQLKSLNVQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1029 237 MobiDBLite consensus disorder prediction 54 75 - -
Aed5g1029 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Aed5g1029 237 PANTHER BHLH TRANSCRIPTION FACTOR 1 237 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aed5g1029 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Aed5g1029 237 CDD bHLH_AtILR3_like 81 156 - -
Aed5g1029 237 SMART finulus 82 133 IPR011598 GO:0046983
Aed5g1029 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 147 IPR036638 GO:0046983
Aed5g1029 237 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 237 - -
Aed5g1029 237 Coils Coil 124 179 - -
Aed5g1029 237 Gene3D - 79 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1029 Aed-Chr5 8124809 8128813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1029 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.124 7.00e-114 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g1029 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1029 - - gmx:100788858 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1029 5 8124809 8128813 Aed5g1029 5 8124809 8128813 ECH
Aed1g0713 1 8281243 8283557 Aed5g1029 5 8124809 8128813 PCT