Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1019 ATGATTGATCGTGTGCCAACCATAGATTCTGAAGATAAGATAGGAAAGGCCTTATCATATGTGAGGGGACAAATTGAATTTCAAGATGTCTACTTCTGTTACCCTTCTAGGCCGGGCACACCAGTCTTGCAGGGATTCAATCTCACTGTCCCAGCAGGCAAGAGTGTAGGCCTTGTGGGAGGAAGTGGTTCAGGTAAATCCACTATCATAGCACTGCTTGAAAGGTTTTATGACCCTTCTGAGGGAGTAATACTCTTGGATGGTCACAAGACTAATAGGCTTCAGCTGAAGTGGTTGAGGTCTCAAATTGGCCTAGTAAATCAAGAGCCTGTTCTCTTTGCCACTTCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGAGCCTCAATGGAAAGTGTGATTAGTGCGGCTAAAGCAGCTAATGCACATGATTTCATTGTCAAGTTGCCAGATGGATATGAAACTCAAGTTGGTCAGTTTGGATTCCAACTGTCTGGCGGGCAGAAGCAACGCATTGCCATTGCAAGAGCCTTACTAAGGGATCCAAAGCTTCTCTTGCTTGATGAAGCTACCAGTGCACTAGATGCTCAATCTGAAAGAGTGGTCCAGGCAGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATTATCATTGCTCACCGCTTGTCTACGATTCAAACGGCCAACTTGATAGCAGTCCTTCAAGCAGGAAGAGTTGTTGAATTAGGTACACATAATGAGCTCATGGAACTGACTGATGGTGAGTATGCTCACATGGTAGAGTTGCAGAAAATAACAACTCAGAATGATGAATCCAAACCTTCCAATCTTCAAATAGTGGCAAAGAGCTCCCACAGAATGAGCATTCCACAAAGTCCAGCTGTAAGTTTCAGATCAAGCACTGTAGGCACTCCAATGTTGTATCCCTTCAGTCAGGGATTTTCAATGGGAACACCTTACTCCTATTCTATCCAATATGACCCTGATGATGATAGTTTTGAGGATAACTTGAAAAGCACAAATCATCCAGCTCCTTCGCAGTGGCGTTTGCTGAAAATGAATGGACCTGAGTGGGGAAGAGCAATGCTAGGAATCTTAGGAGCAATAGGGTCAGGAGCAGTACAACCTGTGAATGCATACTGTGTAGGAACACTTATATCAGTTTATTTTGAAACTGATAGCTCTGTGATGAAGTCTAAAGCTAAAGTCCTGGCCCTTGTTTTCTTAGGAATTGGTATTTTCAACTTCTTCACTAGTATTCTCCAACACTATAACTTTGCAGTTATGGGAGAGAGGTTGACCAAAAGAATAAGAGAGAAGATACTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCATGAAGATAACACAAGTGCATCCGTTTGTGCTAGATTGTCCTCAGAGGCCAACTTGGTTCGTTCCCTTGTTGGTGATCGAATGTGTTTGTTGGCTCAAGCTGTTTTTGGGTCCATCTTTGCCTACACTCTAGGACTTGTGCTCACATGGAAGCTTTCCCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTACTCAAGAAGTGTATTGATGAAGAGTATGGCTGAGAAAGCTCGTAAGGCGCAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTGATAAACCACAGAACCATAACAGCCTTCAGCTCTCAGAAAAGAATGCTGGCACTTTTCAAATCCACAATGGTGGGGCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCTCAGTTTTTCAACACTTCATCAACAGCATTGGCTTACTGGTATGGTGGAAGGCTCTTGTTAGATGGGGATATAGAACCAAAACACCTCTTCCAAGCATTTTTAATATTACTCTTCACTGCATACATTATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGTGCAGTTGGATCAGTGTTTGCAATCCTAGACAGGAAAACTGAGATTGATCCCGAGACCTCATGGGGAGGTGAGAAAAGGAGGAAAATAAGGGGAAGAGTTGAGCTCAAGAGTGTGTTCTTTGCATATCCAACTAGGCCTGATCAAATGATTTTCAAGGGTCTGAATCTTAAAGTTGAACCTGGGAAAACAGTGGCTCTGGTGGGGCACAGTGGTTGTGAAAACACCACTGAGTCTGAGATAAGAAGGGCTGCATCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAGTGATGGGTATGAGACATACTGTGGGGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAACAAAGAATAGCCTTAGCTAGAGCCATACTGAAGAACCCTTCAATCCTGCTTTTGGATGAGGCTACTAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTAGAGAAGATCATGGTTGGAAGAACATGCATTGTAGTGGCACACAGGCTCTCTACAATACAGAAATCCAACTACATTGCTGTGATTAAGAATGGGAAGGTTGCAGAACAAGGCTCACATAATGAATTGATTTCACTTGGACGTGAGGGTGCTTACTATTCTCTTGTTAAACTTCAAAGTGGTAGCTCCCCTAGGTAA 2610 0.431 MIDRVPTIDSEDKIGKALSYVRGQIEFQDVYFCYPSRPGTPVLQGFNLTVPAGKSVGLVGGSGSGKSTIIALLERFYDPSEGVILLDGHKTNRLQLKWLRSQIGLVNQEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKLLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIQTANLIAVLQAGRVVELGTHNELMELTDGEYAHMVELQKITTQNDESKPSNLQIVAKSSHRMSIPQSPAVSFRSSTVGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNLKSTNHPAPSQWRLLKMNGPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSVMKSKAKVLALVFLGIGIFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEDNTSASVCARLSSEANLVRSLVGDRMCLLAQAVFGSIFAYTLGLVLTWKLSLVMIAVQPLVIGSFYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLLDGDIEPKHLFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFAILDRKTEIDPETSWGGEKRRKIRGRVELKSVFFAYPTRPDQMIFKGLNLKVEPGKTVALVGHSGCENTTESEIRRAASLANAHEFISGMSDGYETYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVAHRLSTIQKSNYIAVIKNGKVAEQGSHNELISLGREGAYYSLVKLQSGSSPR 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1019 869 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 363 649 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1019 869 Gene3D ABC transporter type 1, transmembrane domain 309 672 IPR036640 GO:0005524|GO:0016021
Aed5g1019 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 263 IPR027417 -
Aed5g1019 869 Pfam ABC transporter 737 791 IPR003439 GO:0005524
Aed5g1019 869 Gene3D - 675 727 IPR027417 -
Aed5g1019 869 SUPERFAMILY ABC transporter transmembrane region 348 668 IPR036640 GO:0005524|GO:0016021
Aed5g1019 869 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 1 728 - -
Aed5g1019 869 SMART AAA_5 52 244 IPR003593 -
Aed5g1019 869 SMART AAA_5 712 837 IPR003593 -
Aed5g1019 869 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 613 860 IPR003439 GO:0005524
Aed5g1019 869 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524
Aed5g1019 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 863 IPR027417 -
Aed5g1019 869 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 728 IPR039421 -
Aed5g1019 869 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 723 864 - -
Aed5g1019 869 Pfam ABC transporter transmembrane region 363 634 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1019 869 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 723 864 IPR039421 -
Aed5g1019 869 CDD ABC_MTABC3_MDL1_MDL2 25 263 - -
Aed5g1019 869 Gene3D ABC transporter type 1, transmembrane domain 1 282 IPR036640 GO:0005524|GO:0016021
Aed5g1019 869 Gene3D - 15 264 IPR027417 -
Aed5g1019 869 Gene3D - 728 864 IPR027417 -
Aed5g1019 869 CDD ABC_6TM_Pgp_ABCB1_D2_like 351 667 - -
Aed5g1019 869 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524
Aed5g1019 869 Pfam ABC transporter 43 192 IPR003439 GO:0005524
Aed5g1019 869 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 261 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1019 Aed-Chr5 8054762 8058901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1019 363 866 Calmodulin-binding Proteins AT2G36910 31.414 9.18e-71 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1019 K05658 - gmx:100788127 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1019 5 8054762 8058901 Aed5g1019 5 8054762 8058901 ECH