Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1018 ATGGGGAGCAATGGTATGTTTCGTTATGCAGATAGAGTGGACAAGTTGTTGATGTTCTTTGGGACCTTGGGAAGCCTTGGAGATGGACTACAAACCCCTCTCATGATGTACATTCTTAGTGATGTGATCAATGCCTATGGAGACAAGAATAGTCATATTACAAAGCATGATGTGAACAAGTATGCGTTGAGGCTTTTTTGTGCTGCACTTGGAGTTGGACTTTCAGCTTTTGTTGAAGGAATATGTTGGACAAGAACTGCAGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGAAGTTGGATTCTTTGACACTCAGACTGCTGGTACTTCAACAACCTACCAAGTTGTCTCACTCATTTCCTCAGATGCCAATACAATCCAAGTTGTCTTGTGTGAGAAGATACCTGACTGCCTGGCTTACTTGTCAACATTCCTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACACTAGCAGCCATACCACTCTCTGTCATGTTCATTTTGCCGGCTCTTGTATTTGGGAAGATCATGTTGGATCTTGTAATGAAAATGATTGAATCTTATGGGGTTGCTGGTGGGATAGCAGAACAGGCAATATCTTCAATAAGAACTGTTTATTCATATGCTGGGGAGAATCAAACACTAAACAGATTTAGCAGTGCACTTCAAAAAGTTATGGAATTTGGAATAAAGCAAGGTTTTGCTAAGGGGTTGATGTTGGGAAGTATGGGAGTTATTTACATCAGTTGGGGTTTTCAGGCTTGGGTTGGAACATATTTGATCACTAAAAAAGGAGAACAAGGTGGCCATGTGTTTGTAGCTGGCTTCAATGTCCTCATGGGAGGCTTGTAA 885 0.4113 MGSNGMFRYADRVDKLLMFFGTLGSLGDGLQTPLMMYILSDVINAYGDKNSHITKHDVNKYALRLFCAALGVGLSAFVEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGTSTTYQVVSLISSDANTIQVVLCEKIPDCLAYLSTFLFCHIFAFVLSWRLTLAAIPLSVMFILPALVFGKIMLDLVMKMIESYGVAGGIAEQAISSIRTVYSYAGENQTLNRFSSALQKVMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTYLITKKGEQGGHVFVAGFNVLMGGL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1018 294 SUPERFAMILY ABC transporter transmembrane region 7 286 IPR036640 GO:0005524|GO:0016021
Aed5g1018 294 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 294 - -
Aed5g1018 294 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1018 294 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 294 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1018 294 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 293 - -
Aed5g1018 294 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 293 IPR039421 -
Aed5g1018 294 Gene3D ABC transporter type 1, transmembrane domain 3 294 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1018 Aed-Chr5 8052009 8054367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1018 6 294 Calmodulin-binding Proteins AT2G36910 31.849 2.07e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1018 K05658 - gmx:100788127 559.296