Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1000 ATGGCGACTGCAATAACAGAGCAAGAAACCTCGTCACGTGCCACGCACGTGCCGGACTACGCCGCCACCATCACGGATGATGATGACACCGAGGAGGATGAGGAGGAGCAGGTGCATGACGAGAACGACTCCGGAGGCGGAGGGAGGTGGTTTCCGGCGGCATGCGGCGGAGAGAGGCGGAGCGGGGGAGGCGCGCTGGGGCGCGTGCTTGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGGGTGTTCCTGCTAGTGTGCGGCGCGGGGCTGTTCGTGGACCCTCTCTTCTTCTACGCGCTCTCCGTCAGCGACTCGTGCATGTGCGTCTTCGTGGATGGGTGGCTCGCCGTCACCGTCACGGTGCTGCGCTGCATGACGGACGCGCTGCACCTCTGGAACATGCTCATCAGGAGCAAGATGGCCAAACGCACGTTCGGCCTCAGCACTTCAGCCGCCGTCTCCTCGCCCGCCGGATCCTTCGCCGGACTCATAGACACCCGGCCGCGATCCGTAGCGCTCGGGTATCTGAAGTCACGGACGGGCTTCGTTTTTGACCTCTTCGTTATTCTTCCTCTACCCCAGTTATTGCTTTGGGTGGCAATTCCATCGTTGTTGGAGAAAGGTTCAGTGACATTGGTGATGACAGTGTTCTTAATTATCTTTCTATTCCAATACCTTCCCAAAATTTATCATTCGGTTTGCCATCTGCGACGAACGCAAAACCTCTCTGGCTACATTTTTGGAACTGTTTGGTGGGGAATCGCTCTTAACATGATCGCGTATTTTGTTGCTTCCCATGCAGCAGGGGCATGCTGGTACTTGCTGGGGATACAAAGGGCAGCGAAGTGCCTGAAAGTGCAGTGTGAGAAAACAAACGGTTGTGGAATGAACATTCTGTCATGTCAAACGCCAATATACTATGGAAGCAACAGTTTGCTGGTTAGGGATAGGGCAAGGCTGGCTTGGGCAGAGAACAGAGAAGTGAGGCACGCATGCCTTAATGGTCCTGACAACTACAACTATGGAGCTTATAGATGGACTGTTCAGCTTGTCACCAATGATAATCGCTTGGAAAAGATACTCTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGAAACCTAGAGAGTACAACAGACTGGCTAGAAGTAGTTTTCAACATCATCGTCCTGACCAGTGGTCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACAACGTCGAAGAAGCAAGCAATGCAATTGAAGATAAGAAACATCGAATGGTGGATGAGGAAACGACGATTGCCGCTAGGGTTTCGGCAACGCGTGCGTCACTACGAGAGACAACGTTGGGCTGCAACGCGTGGGGTTGATGAATTCGAGATGACTAAAAATCTTCCTGAGGGATTAAGAAGAGACATCAAGTACCATCTTTGTCTTGATTTGGTGAGACAGGTGCCTCTATTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATTTTCACAAAGGGAGAAACAAGAAGGAGACCCAGTTCAGAGAATGCTATTCGTAGTGAGAGGACACCTACAAAGCAGCCAAGTCCTACGCGACGGTGTGAAGAGCTGCTGCATTTGGCTTGGAGAAGGTATAAGCATAGGTTGACTTTGACTTCGTTGTCGTTTATTAGGCCTAGAAGGCCCTTGTCACGGTCTTCTTCCTTGGGTGAGGATAGGCTTCGACTCTACACAGCTTTGTTGACCTCTCCAAAGCCTAATCAGGATGATTTTGATTTTTGA 1812 0.5116 MATAITEQETSSRATHVPDYAATITDDDDTEEDEEEQVHDENDSGGGGRWFPAACGGERRSGGGALGRVLDPRAKWVQEWNRVFLLVCGAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMLIRSKMAKRTFGLSTSAAVSSPAGSFAGLIDTRPRSVALGYLKSRTGFVFDLFVILPLPQLLLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCEKTNGCGMNILSCQTPIYYGSNSLLVRDRARLAWAENREVRHACLNGPDNYNYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTDWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKIRNIEWWMRKRRLPLGFRQRVRHYERQRWAATRGVDEFEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETRRRPSSENAIRSERTPTKQPSPTRRCEELLHLAWRRYKHRLTLTSLSFIRPRRPLSRSSSLGEDRLRLYTALLTSPKPNQDDFDF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1000 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 521 - -
Aed5g1000 603 MobiDBLite consensus disorder prediction 24 40 - -
Aed5g1000 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 547 600 - -
Aed5g1000 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 25 521 - -
Aed5g1000 603 MobiDBLite consensus disorder prediction 522 542 - -
Aed5g1000 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 547 600 - -
Aed5g1000 603 SUPERFAMILY Voltage-gated potassium channels 72 413 - -
Aed5g1000 603 Gene3D Helix hairpin bin 417 483 - -
Aed5g1000 603 Pfam Ion transport protein 80 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed5g1000 603 MobiDBLite consensus disorder prediction 1 18 - -
Aed5g1000 603 MobiDBLite consensus disorder prediction 1 50 - -
Aed5g1000 603 SUPERFAMILY cAMP-binding domain-like 418 518 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1000 Aed-Chr5 7881133 7891123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1000 548 602 Ion Channels AT5G54250 85.455 4.81e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1000 K05391 - gmx:100796761 927.161