LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0987	ATGGCTTCCAACAGCAGCATCGTCCAATGCAGCAACACTTCATCTAGGATGATAAAGAAACATATTTATGATGTGTTTGTGAGCTTCCGAGGTAAGGACACACGCAACAATTTCACGGATCATCTTTTTGGTGCTTTACACAGAAAAGGAATACTTACCTTTAGGGATGACACAAAGCTCAACAAAGGGGAGCGTATACTCTCTAACCTCATGCAAGCAATTGAGGGGTCTCAGATTTTTGTTATTGTCTTCTCAAAGAACTATGCTTCTTCATCATGGTGCTTGAGAGAGCTTGAAAAGATCCTTCATTGTGTTCAAGTCTCGGGTAAACATGTCTTGCCTGTTTTCTATGATGTTGATCCATCTGAGATTCGAAGACAAACGGGGGATTATGAGAAAGCTTTCACCAAACACGAAGAGAGATTCAAAGATGATAAAGAGAAGATGGAGGAAGTGAAAAGATGGAGAGAAAATCTCACACGAGTAGCCGATCTCTCTGGTTGGGATGTGACAAATAAATCACAATATGCTGAAATTGAAAAAATTGTTCAAGAGATAATAAGTAAACTGCGTCACAATTTTTCAAGTCTTCCAAATGATCTAGTTGGGATGGAATCTCCGGTTGAAGAACTAGAAAAACTTTTACTTTTTGACCCAGTTGATGATGTTCGCACCGTAGGAATTTGTGGAATGAGCGGAATAGGAAAGACAACTCTTGCTTCTATTTTATATGATAGAATCTCTAATCAATATGACGCTTGCTGTTTTATTGATGTAAGCAAAGTTTATAAAGATTGTGGCCCAATTGGTTTAGTAAAGCAACTACTCCATCAAACATTGAATGAAGAAAACTTGCAGATATGCAATCTTTATAATGCAGCCAAGTTGATACAAAGTAGGCTACATTACGTGAAGACCCTAATAGTTCTTGACAATGTTGATGAAGTTGAACAACCAGAGAAATTAGTTGTGAATCCAGAATGGTTAGGTGCCGGAAGTAGAATCATCATAATTTCTAAAGACATGCATATCTTAAAAGAGTACGGTGTGACTGCAGTCTACAAAGCTCAACTCTTAAATGGTGCTAATTCTCTTAAATTGTTTTGTAAAAAGGCTTTCAACTGTGAGGATATTGTGGGAGGTTACAAAGAGTTGACATATGATGTGCTGAAATTTACTAATAACCTACCACTAGCAATTAAAGTACTAGGTTCGTTTTTGTCTGGTCGAAGTGTCTCAGAGTGGAGAAGTGCCTTAGTTAGACTCGAAGAGAATCCACACAAAGATATTATGGATGTGCTTCAGATAAGTTATGATGGGCTACAAGAATTGGAAAAGCAAATATTTTTAAATATTGCTTGTTTCTTCAGCGGGTACGAGGAGTTATATGTGAAGAAAGTTCTAGATTGCTGTGGATTTCATGCTGAAATTGGAATAAGAGTCCTCCTTGATAAATCACTCATAGACAATTCACATGGAGACATTCAAATGCATGGTTTGTTGAAAGTTTTGGGCAGAAAAATTGTTAAAGGCAATTCACCAAGAGAGCCAGAAAAGTGGAGCAGGGTTTGGCTCTATAAGGATTTCTACAATATGTCAAAGGCAACGGAAACGGCAATCAATGAAGCCATTGTTTTAGACATATCCAGAGAGAGGGAAAAACTGATGGTTGATGCTGAAGCGTTGTCCAAAATGAGTAACCTTAGATTGCTTATATTTCATGATGTGAAGTTTATGGGAAGCCTTAATTGCCTCTCCAATAAACTACAATTTCTTCAGTGGTATAACTATCCTTTCTCATATTTACCTTCAAGTTTTCAGCCGAACAAACTGGTTGAATTGATCTTGCAACGAAGCAACATCAAAAAACTCTGGAAAGACATAAAGGTGGGCCAAGAAACAACTACCCCTATTGGTTGGATTGATATTGTTGTTCCTGGAAATCAAATACCAAGGTGGTTCAGCAATCAAAATGTTGGAACTTCAATAAGCCTAGACCCATCTCCCATTATGCTTGACATTAATAACTGGATTGGCATTGCTTGCAGCGTGGTATTTGTGGCAGCTGGTGATCCAACTAGTTTGGATGATCATGCTTTGAATTCCTCTATATGCATTGATTTTGAGATGAAATCTTATTCATCCCGGGCTTCTTCCCCGCTGTATATGCCAATACTTCTTGATAGGGATCATGTAACCCTCGAATCGCATCACATGTGGCTACTCTATTTGACTAGGGCAGAATTTATTTCTTATTTTAAAATAGAAACAATGATTGATCTTAATGGCATCAAAATGCTAATCATGGTTGATCGCTCCAAAGGTTTGCACTTGGAGGTGTGCAGTTGTGGATATCAATGGGTATTTAAGGACAATCTGCAAAACCTAAACCCAACAATAATGCGTAGAGGACACAACAACAACAACAACAGTCCAGTTGATGATGATGATTTTTGTTCAAATGAAATGAGTGATCTTGATTCAATGGAATTCGCACCCCTCGTTTATGACCCTCTTGGTTTGCATTTGGAGGTGAAAAATTGTGGGTATCGTTGGATATTTGGGGAGGATATTCAACAATTCAAATCAAACATGATGTGCAGTGGAAATTCTTCATCTCGGAAGCGGAAGCGTTTAACAAGCGATTAA	2649	0.3801	MASNSSIVQCSNTSSRMIKKHIYDVFVSFRGKDTRNNFTDHLFGALHRKGILTFRDDTKLNKGERILSNLMQAIEGSQIFVIVFSKNYASSSWCLRELEKILHCVQVSGKHVLPVFYDVDPSEIRRQTGDYEKAFTKHEERFKDDKEKMEEVKRWRENLTRVADLSGWDVTNKSQYAEIEKIVQEIISKLRHNFSSLPNDLVGMESPVEELEKLLLFDPVDDVRTVGICGMSGIGKTTLASILYDRISNQYDACCFIDVSKVYKDCGPIGLVKQLLHQTLNEENLQICNLYNAAKLIQSRLHYVKTLIVLDNVDEVEQPEKLVVNPEWLGAGSRIIIISKDMHILKEYGVTAVYKAQLLNGANSLKLFCKKAFNCEDIVGGYKELTYDVLKFTNNLPLAIKVLGSFLSGRSVSEWRSALVRLEENPHKDIMDVLQISYDGLQELEKQIFLNIACFFSGYEELYVKKVLDCCGFHAEIGIRVLLDKSLIDNSHGDIQMHGLLKVLGRKIVKGNSPREPEKWSRVWLYKDFYNMSKATETAINEAIVLDISREREKLMVDAEALSKMSNLRLLIFHDVKFMGSLNCLSNKLQFLQWYNYPFSYLPSSFQPNKLVELILQRSNIKKLWKDIKVGQETTTPIGWIDIVVPGNQIPRWFSNQNVGTSISLDPSPIMLDINNWIGIACSVVFVAAGDPTSLDDHALNSSICIDFEMKSYSSRASSPLYMPILLDRDHVTLESHHMWLLYLTRAEFISYFKIETMIDLNGIKMLIMVDRSKGLHLEVCSCGYQWVFKDNLQNLNPTIMRRGHNNNNNSPVDDDDFCSNEMSDLDSMEFAPLVYDPLGLHLEVKNCGYRWIFGEDIQQFKSNMMCSGNSSSRKRKRLTSD	882

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0987	882	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	24	678	-	-
	Aed5g0987	882	Gene3D	-	359	442	IPR042197	-
	Aed5g0987	882	SUPERFAMILY	L domain-like	557	626	-	-
	Aed5g0987	882	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	24	678	IPR044974	GO:0006952
	Aed5g0987	882	PRINTS	Disease resistance protein signature	393	407	-	-
	Aed5g0987	882	PRINTS	Disease resistance protein signature	225	240	-	-
	Aed5g0987	882	PRINTS	Disease resistance protein signature	300	314	-	-
	Aed5g0987	882	Gene3D	-	187	353	IPR027417	-
	Aed5g0987	882	Pfam	NB-ARC domain	206	438	IPR002182	GO:0043531
	Aed5g0987	882	Pfam	C-JID domain	645	793	IPR045344	-
	Aed5g0987	882	SMART	till_3	22	165	IPR000157	GO:0007165
	Aed5g0987	882	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	451	IPR027417	-
	Aed5g0987	882	Gene3D	Ribonuclease Inhibitor	522	637	IPR032675	-
	Aed5g0987	882	ProSiteProfiles	TIR domain profile.	21	190	IPR000157	GO:0007165
	Aed5g0987	882	SUPERFAMILY	Toll/Interleukin receptor TIR domain	13	168	IPR035897	-
	Aed5g0987	882	SUPERFAMILY	"Winged helix" DNA-binding domain	429	531	IPR036390	-
	Aed5g0987	882	Pfam	Leucine Rich Repeat	610	629	IPR011713	-
	Aed5g0987	882	Gene3D	-	20	186	IPR035897	-
	Aed5g0987	882	Pfam	TIR domain	23	196	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0987	Aed-Chr5	7687967	7699496	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0987	11	630	WRKY Transcription Factor Family	AT4G12020	29.890	3.40e-66	240

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0987	-		-	gmx:100820213	1053.89